X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 7.5
Details MORPHEUS 1/30, 0.09 M NPS, 0.1 M BUFFER SYSTEM 2 PH 7.5, 20% ETHYLENE GLYCOL, 10% PEG 8000,

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 140.16 α = 90
b = 77.99 β = 90
c = 109.93 γ = 90
Symmetry
Space Group P 21 21 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 6M -- 2013-07-26
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON DIAMOND BEAMLINE I02 -- Diamond I02

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.9 47 100.0 0.12 -- -- 8.4 -- 94765 -- -3.0 28.75
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.9 1.93 100.0 1.1 -- 2.6 9.0 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.902 47.1 -- 1.35 -- 93335 3757 95.64 -- 0.179 0.1786 0.1976 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.9015 1.9256 -- 85 4039 0.2509 0.2796 -- 61.0
X Ray Diffraction 1.9256 1.9509 -- 139 6242 0.2344 0.2233 -- 95.0
X Ray Diffraction 1.9509 1.9776 -- 134 6287 0.2117 0.2512 -- 95.0
X Ray Diffraction 1.9776 2.0059 -- 141 6419 0.206 0.1888 -- 95.0
X Ray Diffraction 2.0059 2.0358 -- 137 6220 0.1951 0.2303 -- 95.0
X Ray Diffraction 2.0358 2.0677 -- 136 6302 0.1956 0.2194 -- 95.0
X Ray Diffraction 2.0677 2.1016 -- 138 6375 0.1915 0.2103 -- 96.0
X Ray Diffraction 2.1016 2.1378 -- 145 6358 0.1848 0.2047 -- 96.0
X Ray Diffraction 2.1378 2.1767 -- 139 6378 0.1774 0.173 -- 96.0
X Ray Diffraction 2.1767 2.2185 -- 143 6365 0.175 0.23 -- 96.0
X Ray Diffraction 2.2185 2.2638 -- 137 6377 0.1824 0.225 -- 96.0
X Ray Diffraction 2.2638 2.313 -- 140 6381 0.1823 0.2156 -- 96.0
X Ray Diffraction 2.313 2.3668 -- 137 6425 0.1798 0.2151 -- 96.0
X Ray Diffraction 2.3668 2.426 -- 144 6404 0.1723 0.2127 -- 97.0
X Ray Diffraction 2.426 2.4916 -- 141 6453 0.177 0.1891 -- 97.0
X Ray Diffraction 2.4916 2.5649 -- 138 6387 0.172 0.2106 -- 97.0
X Ray Diffraction 2.5649 2.6477 -- 143 6456 0.1644 0.2013 -- 97.0
X Ray Diffraction 2.6477 2.7423 -- 142 6513 0.1657 0.2079 -- 98.0
X Ray Diffraction 2.7423 2.8521 -- 143 6479 0.1677 0.2066 -- 98.0
X Ray Diffraction 2.8521 2.9819 -- 145 6514 0.18 0.1869 -- 98.0
X Ray Diffraction 2.9819 3.1391 -- 143 6525 0.1702 0.1967 -- 98.0
X Ray Diffraction 3.1391 3.3357 -- 144 6511 0.1645 0.1505 -- 98.0
X Ray Diffraction 3.3357 3.5932 -- 142 6534 0.1691 0.1937 -- 99.0
X Ray Diffraction 3.5932 3.9546 -- 144 6574 0.1698 0.1848 -- 99.0
X Ray Diffraction 3.9546 4.5265 -- 146 6599 0.163 0.1755 -- 99.0
X Ray Diffraction 4.5265 5.7013 -- 146 6579 0.1707 0.169 -- 99.0
X Ray Diffraction 5.7013 47.1144 -- 145 6588 0.2299 0.2824 -- 99.0
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.005
f_angle_d 1.157
f_chiral_restr 0.047
f_dihedral_angle_d 33.925
f_bond_d 0.007
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 5173
Nucleic Acid Atoms 0
Heterogen Atoms 533
Solvent Atoms 576

Software

Software
Software Name Purpose
PHENIX refinement version: (PHENIX.REFINE)
HKL-2000 data reduction
HKL-2000 data scaling
PHASER phasing