X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 104.38 α = 90
b = 27.95 β = 119.37
c = 56.71 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC CCD -- 2011-11-05
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON DIAMOND BEAMLINE I04 -- Diamond I04

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.02 27.43 91.5 0.05 -- -- 2.58 -- 52678 -- 0.0 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.1 1.13 57.2 0.41 -- 1.74 1.69 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.1 27.43 -- -- -- 49990 2687 91.28 -- 0.13534 0.13373 0.16544 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.104 1.133 -- 111 2296 0.266 0.273 -- 56.8
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 15.109
Anisotropic B[1][1] -0.08
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] -0.25
Anisotropic B[2][2] 1.55
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -0.73
RMS Deviations
Key Refinement Restraint Deviation
r_bond_other_d 0.001
r_mcbond_it 2.673
r_bond_refined_d 0.023
r_dihedral_angle_1_deg 4.971
r_sphericity_free 38.154
r_sphericity_bonded 13.159
r_angle_refined_deg 1.967
r_scbond_it 4.61
r_angle_other_deg 0.933
r_mcangle_it 3.208
r_chiral_restr 0.135
r_gen_planes_refined 0.012
r_dihedral_angle_2_deg 36.123
r_gen_planes_other 0.001
r_rigid_bond_restr 6.457
r_mcbond_other 2.581
r_dihedral_angle_4_deg 16.055
r_dihedral_angle_3_deg 12.147
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 1286
Nucleic Acid Atoms 0
Heterogen Atoms 4
Solvent Atoms 191

Software

Software
Software Name Purpose
REFMAC refinement version: 5.8.0049
XDS data reduction
SCALA data scaling
PHASER phasing