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X-RAY DIFFRACTION
Materials and Methods page
4CEJ
  •   Crystallization Hide
    Crystallization Experiments
    pH 7.5
    Details 0.1M TRIS-HCL PH 7.5, 11% PEG 4000, 0.1M MAGNESIUM ACETATE
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 77.44 α = 90
    b = 152.94 β = 94.3
    c = 125.24 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector PIXEL (PILATUS 6M)
    Type DECTRIS
    Collection Date 2013-07-11
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type DIAMOND BEAMLINE I24
    Wavelength 0.96863
    Site DIAMOND
    Beamline I24
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 2.0
    Resolution(High) 3
    Resolution(Low) 35.55
    Number Reflections(Observed) 57963
    Percent Possible(Observed) 99.7
    R Merge I(Observed) 0.05
    Redundancy 3.8
     
    High Resolution Shell Details
    Resolution(High) 3.0
    Resolution(Low) 3.09
    Percent Possible(All) 99.7
    R Merge I(Observed) 0.42
    Mean I Over Sigma(Observed) 2.9
    Redundancy 3.9
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 3.0
    Resolution(Low) 29.731
    Cut-off Sigma(F) 1.36
    Number of Reflections(Observed) 57942
    Number of Reflections(R-Free) 2923
    Percent Reflections(Observed) 99.64
    R-Factor(Observed) 0.2048
    R-Work 0.2027
    R-Free 0.2434
     
    Temperature Factor Modeling
    Data Not Available
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0
    Shell Resolution(Low) 3.0491
    Number of Reflections(R-Free) 124
    Number of Reflections(R-Work) 2613
    R-Factor(R-Work) 0.3112
    R-Factor(R-Free) 0.3638
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0491
    Shell Resolution(Low) 3.1017
    Number of Reflections(R-Free) 165
    Number of Reflections(R-Work) 2608
    R-Factor(R-Work) 0.2786
    R-Factor(R-Free) 0.3517
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1017
    Shell Resolution(Low) 3.158
    Number of Reflections(R-Free) 116
    Number of Reflections(R-Work) 2607
    R-Factor(R-Work) 0.2666
    R-Factor(R-Free) 0.2889
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.158
    Shell Resolution(Low) 3.2187
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 2619
    R-Factor(R-Work) 0.2562
    R-Factor(R-Free) 0.3518
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.2187
    Shell Resolution(Low) 3.2843
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 2575
    R-Factor(R-Work) 0.2462
    R-Factor(R-Free) 0.2763
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.2843
    Shell Resolution(Low) 3.3556
    Number of Reflections(R-Free) 132
    Number of Reflections(R-Work) 2656
    R-Factor(R-Work) 0.2461
    R-Factor(R-Free) 0.2796
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.3556
    Shell Resolution(Low) 3.4336
    Number of Reflections(R-Free) 150
    Number of Reflections(R-Work) 2565
    R-Factor(R-Work) 0.2378
    R-Factor(R-Free) 0.3142
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.4336
    Shell Resolution(Low) 3.5193
    Number of Reflections(R-Free) 153
    Number of Reflections(R-Work) 2611
    R-Factor(R-Work) 0.2226
    R-Factor(R-Free) 0.2762
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.5193
    Shell Resolution(Low) 3.6143
    Number of Reflections(R-Free) 126
    Number of Reflections(R-Work) 2605
    R-Factor(R-Work) 0.2072
    R-Factor(R-Free) 0.2822
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.6143
    Shell Resolution(Low) 3.7205
    Number of Reflections(R-Free) 147
    Number of Reflections(R-Work) 2651
    R-Factor(R-Work) 0.2035
    R-Factor(R-Free) 0.2501
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.7205
    Shell Resolution(Low) 3.8403
    Number of Reflections(R-Free) 128
    Number of Reflections(R-Work) 2604
    R-Factor(R-Work) 0.2059
    R-Factor(R-Free) 0.2927
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.8403
    Shell Resolution(Low) 3.9772
    Number of Reflections(R-Free) 160
    Number of Reflections(R-Work) 2570
    R-Factor(R-Work) 0.2035
    R-Factor(R-Free) 0.2296
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.9772
    Shell Resolution(Low) 4.1361
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 2632
    R-Factor(R-Work) 0.1959
    R-Factor(R-Free) 0.217
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.1361
    Shell Resolution(Low) 4.3238
    Number of Reflections(R-Free) 130
    Number of Reflections(R-Work) 2643
    R-Factor(R-Work) 0.186
    R-Factor(R-Free) 0.2357
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.3238
    Shell Resolution(Low) 4.551
    Number of Reflections(R-Free) 116
    Number of Reflections(R-Work) 2633
    R-Factor(R-Work) 0.1779
    R-Factor(R-Free) 0.2057
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.551
    Shell Resolution(Low) 4.835
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 2634
    R-Factor(R-Work) 0.1787
    R-Factor(R-Free) 0.2279
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.835
    Shell Resolution(Low) 5.2065
    Number of Reflections(R-Free) 146
    Number of Reflections(R-Work) 2632
    R-Factor(R-Work) 0.1774
    R-Factor(R-Free) 0.225
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.2065
    Shell Resolution(Low) 5.7271
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 2619
    R-Factor(R-Work) 0.1996
    R-Factor(R-Free) 0.2413
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.7271
    Shell Resolution(Low) 6.5481
    Number of Reflections(R-Free) 152
    Number of Reflections(R-Work) 2629
    R-Factor(R-Work) 0.2106
    R-Factor(R-Free) 0.264
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 6.5481
    Shell Resolution(Low) 8.2209
    Number of Reflections(R-Free) 137
    Number of Reflections(R-Work) 2645
    R-Factor(R-Work) 0.1986
    R-Factor(R-Free) 0.2269
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 8.2209
    Shell Resolution(Low) 29.7327
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 2668
    R-Factor(R-Work) 0.1756
    R-Factor(R-Free) 0.1717
    Percent Reflections(Observed) 99.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.004
    f_chiral_restr 0.032
    f_dihedral_angle_d 19.061
    f_angle_d 0.774
    f_bond_d 0.004
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 18938
    Nucleic Acid Atoms 925
    Heterogen Atoms 72
    Solvent Atoms 7
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) SCALA
    Structure Solution PHENIX PHASER-MR
    Structure Refinement PHENIX (PHENIX.REFINE)
     
    Software
    refinement PHENIX version: (PHENIX.REFINE)
    model building PHENIX version: PHASER-MR