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X-RAY DIFFRACTION
Materials and Methods page
4C64
  •   Crystallization Hide
    Crystallization Experiments
    pH 7.5
    Details 40% MPD, SPERMINE, MAGNESIUM CHLORIDE, SODIUM CACODYLATE PH 7.5
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 25.15 α = 90
    b = 39.84 β = 90
    c = 65.6 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector PIXEL (PILATUS 2M)
    Type DECTRIS
    Details MIRRORS
    Collection Date 2011-08-05
     
    Diffraction Radiation
    Monochromator SI (111) DOUBLE CRYSTAL
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type DIAMOND BEAMLINE I04-1
    Wavelength 0.917300
    Site DIAMOND
    Beamline I04-1
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 1.3
    Resolution(Low) 25.32
    Number Reflections(Observed) 16471
    Percent Possible(Observed) 98.0
    R Merge I(Observed) 0.03
    B(Isotropic) From Wilson Plot 16.78
    Redundancy 6.3
     
    High Resolution Shell Details
    Resolution(High) 1.3
    Resolution(Low) 1.37
    Percent Possible(All) 95.9
    R Merge I(Observed) 0.22
    Mean I Over Sigma(Observed) 6.1
    Redundancy 5.1
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.32
    Resolution(Low) 25.322
    Cut-off Sigma(F) 0.0
    Number of Reflections(Observed) 15416
    Number of Reflections(R-Free) 1516
    Percent Reflections(Observed) 95.62
    R-Factor(Observed) 0.1426
    R-Work 0.1385
    R-Free 0.1823
     
    Temperature Factor Modeling
    Mean Isotropic B Value 23.78
    Anisotropic B[1][1] -1.0359
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 0.5813
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 0.4545
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.3201
    Shell Resolution(Low) 1.3627
    Number of Reflections(R-Free) 126
    Number of Reflections(R-Work) 1127
    R-Factor(R-Work) 0.1777
    R-Factor(R-Free) 0.2526
    Percent Reflections(Observed) 88.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.3627
    Shell Resolution(Low) 1.4114
    Number of Reflections(R-Free) 132
    Number of Reflections(R-Work) 1185
    R-Factor(R-Work) 0.1614
    R-Factor(R-Free) 0.2391
    Percent Reflections(Observed) 91.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.4114
    Shell Resolution(Low) 1.4679
    Number of Reflections(R-Free) 128
    Number of Reflections(R-Work) 1225
    R-Factor(R-Work) 0.1382
    R-Factor(R-Free) 0.2079
    Percent Reflections(Observed) 93.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.4679
    Shell Resolution(Low) 1.5347
    Number of Reflections(R-Free) 129
    Number of Reflections(R-Work) 1171
    R-Factor(R-Work) 0.1344
    R-Factor(R-Free) 0.1797
    Percent Reflections(Observed) 91.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.5347
    Shell Resolution(Low) 1.6156
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 1258
    R-Factor(R-Work) 0.1204
    R-Factor(R-Free) 0.1832
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6156
    Shell Resolution(Low) 1.7168
    Number of Reflections(R-Free) 137
    Number of Reflections(R-Work) 1266
    R-Factor(R-Work) 0.107
    R-Factor(R-Free) 0.1799
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.7168
    Shell Resolution(Low) 1.8493
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 1293
    R-Factor(R-Work) 0.1083
    R-Factor(R-Free) 0.1608
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8493
    Shell Resolution(Low) 2.0353
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 1299
    R-Factor(R-Work) 0.1292
    R-Factor(R-Free) 0.1787
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0353
    Shell Resolution(Low) 2.3296
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 1314
    R-Factor(R-Work) 0.1415
    R-Factor(R-Free) 0.2268
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3296
    Shell Resolution(Low) 2.9344
    Number of Reflections(R-Free) 147
    Number of Reflections(R-Work) 1343
    R-Factor(R-Work) 0.1571
    R-Factor(R-Free) 0.1948
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.9344
    Shell Resolution(Low) 25.3264
    Number of Reflections(R-Free) 155
    Number of Reflections(R-Work) 1419
    R-Factor(R-Work) 0.1406
    R-Factor(R-Free) 0.1607
    Percent Reflections(Observed) 99.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.035
    f_chiral_restr 0.099
    f_dihedral_angle_d 30.264
    f_angle_d 2.087
    f_bond_d 0.017
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 0
    Nucleic Acid Atoms 486
    Heterogen Atoms 1
    Solvent Atoms 131
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) SCALA
    Structure Solution PHASER
    Structure Refinement PHENIX (PHENIX.REFINE)
     
    Software
    refinement PHENIX version: (PHENIX.REFINE)
    model building PHASER