POP-OUT | CLOSE
 
X-RAY DIFFRACTION
Materials and Methods page
4C63
  •   Crystallization Hide
    Crystallization Experiments
    pH 7.5
    Details 40% MPD, SPERMINE, MAGNESIUM CHLORIDE, SODIUM CACODYLATE PH 7.5
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 24.46 α = 90
    b = 40.06 β = 90
    c = 65.41 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector PIXEL (PILATUS 2M)
    Type DECTRIS
    Details MIRRORS
    Collection Date 2011-08-06
     
    Diffraction Radiation
    Monochromator SI (111) DOUBLE CRYSTAL
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type DIAMOND BEAMLINE I04-1
    Wavelength 0.917300
    Site DIAMOND
    Beamline I04-1
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 1.3
    Resolution(Low) 25.34
    Number Reflections(Observed) 16355
    Percent Possible(Observed) 98.4
    R Merge I(Observed) 0.06
    B(Isotropic) From Wilson Plot 19.15
    Redundancy 12.4
     
    High Resolution Shell Details
    Resolution(High) 1.3
    Resolution(Low) 1.37
    Percent Possible(All) 93.9
    R Merge I(Observed) 1.23
    Mean I Over Sigma(Observed) 2.3
    Redundancy 12.4
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.32
    Resolution(Low) 25.335
    Cut-off Sigma(F) 0.0
    Number of Reflections(Observed) 15039
    Number of Reflections(R-Free) 1503
    Percent Reflections(Observed) 95.57
    R-Factor(Observed) 0.1534
    R-Work 0.1497
    R-Free 0.1848
     
    Temperature Factor Modeling
    Mean Isotropic B Value 24.89
    Anisotropic B[1][1] 2.8962
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -1.8127
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -1.0835
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.3201
    Shell Resolution(Low) 1.3627
    Number of Reflections(R-Free) 117
    Number of Reflections(R-Work) 1086
    R-Factor(R-Work) 0.225
    R-Factor(R-Free) 0.2821
    Percent Reflections(Observed) 85.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.3627
    Shell Resolution(Low) 1.4114
    Number of Reflections(R-Free) 127
    Number of Reflections(R-Work) 1129
    R-Factor(R-Work) 0.1919
    R-Factor(R-Free) 0.2955
    Percent Reflections(Observed) 90.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.4114
    Shell Resolution(Low) 1.4679
    Number of Reflections(R-Free) 130
    Number of Reflections(R-Work) 1186
    R-Factor(R-Work) 0.1629
    R-Factor(R-Free) 0.22
    Percent Reflections(Observed) 93.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.4679
    Shell Resolution(Low) 1.5347
    Number of Reflections(R-Free) 134
    Number of Reflections(R-Work) 1165
    R-Factor(R-Work) 0.1396
    R-Factor(R-Free) 0.1949
    Percent Reflections(Observed) 93.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.5347
    Shell Resolution(Low) 1.6156
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 1234
    R-Factor(R-Work) 0.113
    R-Factor(R-Free) 0.2065
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6156
    Shell Resolution(Low) 1.7168
    Number of Reflections(R-Free) 135
    Number of Reflections(R-Work) 1249
    R-Factor(R-Work) 0.1001
    R-Factor(R-Free) 0.1565
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.7168
    Shell Resolution(Low) 1.8493
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 1266
    R-Factor(R-Work) 0.1096
    R-Factor(R-Free) 0.168
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8493
    Shell Resolution(Low) 2.0353
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 1283
    R-Factor(R-Work) 0.1419
    R-Factor(R-Free) 0.1721
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0353
    Shell Resolution(Low) 2.3296
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 1277
    R-Factor(R-Work) 0.15
    R-Factor(R-Free) 0.2021
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3296
    Shell Resolution(Low) 2.9344
    Number of Reflections(R-Free) 146
    Number of Reflections(R-Work) 1301
    R-Factor(R-Work) 0.1731
    R-Factor(R-Free) 0.2427
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.9344
    Shell Resolution(Low) 25.34
    Number of Reflections(R-Free) 151
    Number of Reflections(R-Work) 1360
    R-Factor(R-Work) 0.1527
    R-Factor(R-Free) 0.1554
    Percent Reflections(Observed) 97.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.033
    f_chiral_restr 0.113
    f_dihedral_angle_d 31.124
    f_angle_d 2.364
    f_bond_d 0.021
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 0
    Nucleic Acid Atoms 488
    Heterogen Atoms 1
    Solvent Atoms 94
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) SCALA
    Structure Solution PHASER
    Structure Refinement PHENIX (PHENIX.REFINE)
     
    Software
    refinement PHENIX version: (PHENIX.REFINE)
    model building PHASER