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X-RAY DIFFRACTION
Materials and Methods page
4C30
  •   Crystallization Hide
    Crystallization Experiments
    Details 22% PEG 3350, 0.1 M BIS-TRIS PROPANE PH 7.5, 0.1 M NA-FLUORIDE
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 68.49 α = 90
    b = 89.79 β = 89.97
    c = 293.8 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ESRF BEAMLINE ID23-1
    Wavelength 1.078
    Site ESRF
    Beamline ID23-1
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 3
    Resolution(Low) 66.2
    Number Reflections(Observed) 62649
    Percent Possible(Observed) 89.0
    R Merge I(Observed) 0.06
    B(Isotropic) From Wilson Plot 72.3
    Redundancy 1.5
     
    High Resolution Shell Details
    Resolution(High) 3.0
    Resolution(Low) 3.16
    Percent Possible(All) 86.5
    R Merge I(Observed) 0.32
    Mean I Over Sigma(Observed) 1.9
    Redundancy 1.4
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 3.0
    Resolution(Low) 66.18
    Number of Reflections(Observed) 59507
    Number of Reflections(R-Free) 3128
    Percent Reflections(Observed) 87.23
    R-Factor(Observed) 0.23114
    R-Work 0.2282
    R-Free 0.28783
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 104.631
    Anisotropic B[1][1] 7.5
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] -0.01
    Anisotropic B[2][2] -0.6
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -6.91
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0
    Shell Resolution(Low) 3.078
    Number of Reflections(R-Free) 241
    Number of Reflections(R-Work) 4153
    R-Factor(R-Work) 0.337
    R-Factor(R-Free) 0.365
    Percent Reflections(Observed) 83.84
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_gen_planes_refined 0.008
    r_chiral_restr 0.095
    r_dihedral_angle_4_deg 18.164
    r_dihedral_angle_3_deg 18.029
    r_dihedral_angle_2_deg 35.336
    r_dihedral_angle_1_deg 8.292
    r_angle_refined_deg 1.544
    r_bond_refined_d 0.012
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 20008
    Nucleic Acid Atoms 1876
    Heterogen Atoms 68
    Solvent Atoms 97
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (data scaling) SCALA
    Structure Solution PHASER
    Structure Refinement REFMAC 5.6.0085
     
    Software
    refinement REFMAC version: 5.6.0085
    model building PHASER