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X-RAY DIFFRACTION
Materials and Methods page
4BWM
  •   Crystallization Hide
    Crystallization Experiments
    pH 8.5
    Details HANGING DROP. 100MM TRIS PH8.5, 200MM MG-FORMATE, 20% PEG 8K MICROSEEDED
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 143.19 α = 90
    b = 86.28 β = 90
    c = 63.09 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector PIXEL (PILATUS 6M)
    Type DECTRIS
    Details DYNAMICALLY BENDABLE MIRROR
    Collection Date 2012-04-27
     
    Diffraction Radiation
    Monochromator LN2 COOLED FIXED-EXIT SI(111) MONOCHROMATOR
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type SLS BEAMLINE PX
    Wavelength 1.000040
    Site SLS
    Beamline PX
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 2.0
    Resolution(High) 1.75
    Resolution(Low) 47.34
    Number Reflections(Observed) 79729
    Percent Possible(Observed) 99.9
    R Merge I(Observed) 0.08
    B(Isotropic) From Wilson Plot 26.55
    Redundancy 6.59
     
    High Resolution Shell Details
    Resolution(High) 1.75
    Resolution(Low) 1.85
    Percent Possible(All) 99.4
    R Merge I(Observed) 1.12
    Mean I Over Sigma(Observed) 1.7
    Redundancy 6.62
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.749
    Resolution(Low) 47.985
    Cut-off Sigma(F) 2.0
    Number of Reflections(Observed) 79632
    Number of Reflections(R-Free) 3989
    Percent Reflections(Observed) 99.89
    R-Factor(Observed) 0.17
    R-Work 0.168
    R-Free 0.2076
     
    Temperature Factor Modeling
    Data Not Available
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.7488
    Shell Resolution(Low) 1.7701
    Number of Reflections(R-Free) 126
    Number of Reflections(R-Work) 2580
    R-Factor(R-Work) 0.2574
    R-Factor(R-Free) 0.2844
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.7701
    Shell Resolution(Low) 1.7925
    Number of Reflections(R-Free) 124
    Number of Reflections(R-Work) 2701
    R-Factor(R-Work) 0.2481
    R-Factor(R-Free) 0.2563
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.7925
    Shell Resolution(Low) 1.8161
    Number of Reflections(R-Free) 149
    Number of Reflections(R-Work) 2673
    R-Factor(R-Work) 0.2429
    R-Factor(R-Free) 0.2715
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8161
    Shell Resolution(Low) 1.841
    Number of Reflections(R-Free) 137
    Number of Reflections(R-Work) 2682
    R-Factor(R-Work) 0.2316
    R-Factor(R-Free) 0.2517
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.841
    Shell Resolution(Low) 1.8673
    Number of Reflections(R-Free) 147
    Number of Reflections(R-Work) 2645
    R-Factor(R-Work) 0.2255
    R-Factor(R-Free) 0.2323
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8673
    Shell Resolution(Low) 1.8952
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 2659
    R-Factor(R-Work) 0.2153
    R-Factor(R-Free) 0.2217
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8952
    Shell Resolution(Low) 1.9248
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 2693
    R-Factor(R-Work) 0.2093
    R-Factor(R-Free) 0.2472
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9248
    Shell Resolution(Low) 1.9564
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 2674
    R-Factor(R-Work) 0.1963
    R-Factor(R-Free) 0.2465
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9564
    Shell Resolution(Low) 1.9901
    Number of Reflections(R-Free) 134
    Number of Reflections(R-Work) 2673
    R-Factor(R-Work) 0.1944
    R-Factor(R-Free) 0.219
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9901
    Shell Resolution(Low) 2.0263
    Number of Reflections(R-Free) 162
    Number of Reflections(R-Work) 2658
    R-Factor(R-Work) 0.1944
    R-Factor(R-Free) 0.2317
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0263
    Shell Resolution(Low) 2.0653
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 2684
    R-Factor(R-Work) 0.1799
    R-Factor(R-Free) 0.212
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0653
    Shell Resolution(Low) 2.1074
    Number of Reflections(R-Free) 135
    Number of Reflections(R-Work) 2687
    R-Factor(R-Work) 0.1777
    R-Factor(R-Free) 0.1928
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1074
    Shell Resolution(Low) 2.1532
    Number of Reflections(R-Free) 137
    Number of Reflections(R-Work) 2676
    R-Factor(R-Work) 0.1671
    R-Factor(R-Free) 0.2065
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1532
    Shell Resolution(Low) 2.2033
    Number of Reflections(R-Free) 145
    Number of Reflections(R-Work) 2687
    R-Factor(R-Work) 0.1629
    R-Factor(R-Free) 0.1953
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2033
    Shell Resolution(Low) 2.2584
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 2702
    R-Factor(R-Work) 0.1617
    R-Factor(R-Free) 0.1902
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2584
    Shell Resolution(Low) 2.3195
    Number of Reflections(R-Free) 131
    Number of Reflections(R-Work) 2697
    R-Factor(R-Work) 0.1717
    R-Factor(R-Free) 0.2331
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3195
    Shell Resolution(Low) 2.3877
    Number of Reflections(R-Free) 147
    Number of Reflections(R-Work) 2691
    R-Factor(R-Work) 0.1716
    R-Factor(R-Free) 0.199
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3877
    Shell Resolution(Low) 2.4648
    Number of Reflections(R-Free) 149
    Number of Reflections(R-Work) 2683
    R-Factor(R-Work) 0.1697
    R-Factor(R-Free) 0.2382
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4648
    Shell Resolution(Low) 2.5529
    Number of Reflections(R-Free) 132
    Number of Reflections(R-Work) 2717
    R-Factor(R-Work) 0.1743
    R-Factor(R-Free) 0.2214
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5529
    Shell Resolution(Low) 2.6551
    Number of Reflections(R-Free) 152
    Number of Reflections(R-Work) 2675
    R-Factor(R-Work) 0.1806
    R-Factor(R-Free) 0.2253
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6551
    Shell Resolution(Low) 2.7759
    Number of Reflections(R-Free) 162
    Number of Reflections(R-Work) 2704
    R-Factor(R-Work) 0.1827
    R-Factor(R-Free) 0.2191
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.7759
    Shell Resolution(Low) 2.9223
    Number of Reflections(R-Free) 116
    Number of Reflections(R-Work) 2724
    R-Factor(R-Work) 0.1794
    R-Factor(R-Free) 0.2458
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.9223
    Shell Resolution(Low) 3.1053
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 2724
    R-Factor(R-Work) 0.1793
    R-Factor(R-Free) 0.2338
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1053
    Shell Resolution(Low) 3.345
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 2764
    R-Factor(R-Work) 0.1722
    R-Factor(R-Free) 0.2255
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.345
    Shell Resolution(Low) 3.6815
    Number of Reflections(R-Free) 167
    Number of Reflections(R-Work) 2710
    R-Factor(R-Work) 0.1495
    R-Factor(R-Free) 0.1922
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.6815
    Shell Resolution(Low) 4.214
    Number of Reflections(R-Free) 153
    Number of Reflections(R-Work) 2758
    R-Factor(R-Work) 0.1336
    R-Factor(R-Free) 0.17
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.214
    Shell Resolution(Low) 5.3081
    Number of Reflections(R-Free) 146
    Number of Reflections(R-Work) 2791
    R-Factor(R-Work) 0.1368
    R-Factor(R-Free) 0.1616
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.3081
    Shell Resolution(Low) 48.003
    Number of Reflections(R-Free) 152
    Number of Reflections(R-Work) 2931
    R-Factor(R-Work) 0.1625
    R-Factor(R-Free) 0.2148
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.005
    f_chiral_restr 0.07
    f_dihedral_angle_d 14.698
    f_angle_d 1.089
    f_bond_d 0.007
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 4288
    Nucleic Acid Atoms 504
    Heterogen Atoms 44
    Solvent Atoms 631
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) XDS
    Structure Solution PHENIX
    Structure Refinement PHENIX (PHENIX.REFINE: DEV_1411)
     
    Software
    refinement PHENIX version: (PHENIX.REFINE: DEV_1411)
    model building PHENIX