POP-OUT | CLOSE

An Information Portal to 107754 Biological Macromolecular Structures

X-RAY DIFFRACTION
Materials and Methods page
4BWJ
  •   Crystallization Hide
    Crystallization Experiments
    pH 7.5
    Details HANGING DROP. 100MM TRIS PH 7.5, 200MM MG-FORMATE, 15% PEG 8K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 108.14 α = 90
    b = 108.14 β = 90
    c = 89.81 γ = 120
     
    Space Group
    Space Group Name:    P 31 2 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector PIXEL (PILATUS 6M)
    Type DECTRIS
    Details DYNAMICALLY BENDABLE MIRROR
    Collection Date 2012-02-29
     
    Diffraction Radiation
    Monochromator LN2 COOLED FIXED-EXIT SI(111) MONOCHROMATOR
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type SLS BEAMLINE PX
    Wavelength 1.00000
    Site SLS
    Beamline PX
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 2.0
    Resolution(High) 1.55
    Resolution(Low) 46.83
    Number Reflections(Observed) 88092
    Percent Possible(Observed) 99.5
    R Merge I(Observed) 0.06
    B(Isotropic) From Wilson Plot 29.16
    Redundancy 8.57
     
    High Resolution Shell Details
    Resolution(High) 1.55
    Resolution(Low) 1.64
    Percent Possible(All) 98.0
    R Merge I(Observed) 1.12
    Mean I Over Sigma(Observed) 1.64
    Redundancy 8.62
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method OTHER
    reflnsShellList 1.55
    Resolution(Low) 46.827
    Cut-off Sigma(F) 2.0
    Number of Reflections(Observed) 87950
    Number of Reflections(R-Free) 4377
    Percent Reflections(Observed) 99.95
    R-Factor(Observed) 0.1605
    R-Work 0.1583
    R-Free 0.2014
     
    Temperature Factor Modeling
    Data Not Available
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.5501
    Shell Resolution(Low) 1.5677
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 2705
    R-Factor(R-Work) 0.3026
    R-Factor(R-Free) 0.2998
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.5677
    Shell Resolution(Low) 1.5861
    Number of Reflections(R-Free) 157
    Number of Reflections(R-Work) 2764
    R-Factor(R-Work) 0.2784
    R-Factor(R-Free) 0.3288
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.5861
    Shell Resolution(Low) 1.6055
    Number of Reflections(R-Free) 126
    Number of Reflections(R-Work) 2763
    R-Factor(R-Work) 0.2628
    R-Factor(R-Free) 0.2831
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6055
    Shell Resolution(Low) 1.6258
    Number of Reflections(R-Free) 134
    Number of Reflections(R-Work) 2784
    R-Factor(R-Work) 0.2444
    R-Factor(R-Free) 0.2776
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6258
    Shell Resolution(Low) 1.6472
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 2754
    R-Factor(R-Work) 0.2336
    R-Factor(R-Free) 0.2563
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6472
    Shell Resolution(Low) 1.6697
    Number of Reflections(R-Free) 130
    Number of Reflections(R-Work) 2769
    R-Factor(R-Work) 0.2212
    R-Factor(R-Free) 0.2646
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6697
    Shell Resolution(Low) 1.6936
    Number of Reflections(R-Free) 150
    Number of Reflections(R-Work) 2802
    R-Factor(R-Work) 0.2184
    R-Factor(R-Free) 0.2303
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6936
    Shell Resolution(Low) 1.7189
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 2774
    R-Factor(R-Work) 0.2065
    R-Factor(R-Free) 0.2617
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.7189
    Shell Resolution(Low) 1.7457
    Number of Reflections(R-Free) 147
    Number of Reflections(R-Work) 2769
    R-Factor(R-Work) 0.2105
    R-Factor(R-Free) 0.2638
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.7457
    Shell Resolution(Low) 1.7744
    Number of Reflections(R-Free) 148
    Number of Reflections(R-Work) 2762
    R-Factor(R-Work) 0.1994
    R-Factor(R-Free) 0.2379
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.7744
    Shell Resolution(Low) 1.805
    Number of Reflections(R-Free) 146
    Number of Reflections(R-Work) 2752
    R-Factor(R-Work) 0.1957
    R-Factor(R-Free) 0.2397
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.805
    Shell Resolution(Low) 1.8378
    Number of Reflections(R-Free) 159
    Number of Reflections(R-Work) 2759
    R-Factor(R-Work) 0.1889
    R-Factor(R-Free) 0.2511
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8378
    Shell Resolution(Low) 1.8731
    Number of Reflections(R-Free) 148
    Number of Reflections(R-Work) 2791
    R-Factor(R-Work) 0.1807
    R-Factor(R-Free) 0.2062
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8731
    Shell Resolution(Low) 1.9114
    Number of Reflections(R-Free) 151
    Number of Reflections(R-Work) 2730
    R-Factor(R-Work) 0.1767
    R-Factor(R-Free) 0.2217
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9114
    Shell Resolution(Low) 1.9529
    Number of Reflections(R-Free) 147
    Number of Reflections(R-Work) 2779
    R-Factor(R-Work) 0.1836
    R-Factor(R-Free) 0.2487
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9529
    Shell Resolution(Low) 1.9984
    Number of Reflections(R-Free) 163
    Number of Reflections(R-Work) 2767
    R-Factor(R-Work) 0.1808
    R-Factor(R-Free) 0.2227
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9984
    Shell Resolution(Low) 2.0483
    Number of Reflections(R-Free) 153
    Number of Reflections(R-Work) 2731
    R-Factor(R-Work) 0.1791
    R-Factor(R-Free) 0.2191
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0483
    Shell Resolution(Low) 2.1037
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 2799
    R-Factor(R-Work) 0.1737
    R-Factor(R-Free) 0.2489
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1037
    Shell Resolution(Low) 2.1656
    Number of Reflections(R-Free) 130
    Number of Reflections(R-Work) 2822
    R-Factor(R-Work) 0.1643
    R-Factor(R-Free) 0.2028
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1656
    Shell Resolution(Low) 2.2355
    Number of Reflections(R-Free) 128
    Number of Reflections(R-Work) 2805
    R-Factor(R-Work) 0.1669
    R-Factor(R-Free) 0.2174
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2355
    Shell Resolution(Low) 2.3154
    Number of Reflections(R-Free) 145
    Number of Reflections(R-Work) 2763
    R-Factor(R-Work) 0.1582
    R-Factor(R-Free) 0.2132
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3154
    Shell Resolution(Low) 2.4081
    Number of Reflections(R-Free) 130
    Number of Reflections(R-Work) 2809
    R-Factor(R-Work) 0.158
    R-Factor(R-Free) 0.222
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4081
    Shell Resolution(Low) 2.5177
    Number of Reflections(R-Free) 159
    Number of Reflections(R-Work) 2771
    R-Factor(R-Work) 0.16
    R-Factor(R-Free) 0.2083
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5177
    Shell Resolution(Low) 2.6504
    Number of Reflections(R-Free) 148
    Number of Reflections(R-Work) 2805
    R-Factor(R-Work) 0.1625
    R-Factor(R-Free) 0.2336
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6504
    Shell Resolution(Low) 2.8165
    Number of Reflections(R-Free) 150
    Number of Reflections(R-Work) 2790
    R-Factor(R-Work) 0.1696
    R-Factor(R-Free) 0.2049
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8165
    Shell Resolution(Low) 3.0339
    Number of Reflections(R-Free) 149
    Number of Reflections(R-Work) 2798
    R-Factor(R-Work) 0.17
    R-Factor(R-Free) 0.2156
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0339
    Shell Resolution(Low) 3.3391
    Number of Reflections(R-Free) 148
    Number of Reflections(R-Work) 2832
    R-Factor(R-Work) 0.156
    R-Factor(R-Free) 0.1914
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.3391
    Shell Resolution(Low) 3.8221
    Number of Reflections(R-Free) 165
    Number of Reflections(R-Work) 2816
    R-Factor(R-Work) 0.1354
    R-Factor(R-Free) 0.1625
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.8221
    Shell Resolution(Low) 4.8147
    Number of Reflections(R-Free) 158
    Number of Reflections(R-Work) 2847
    R-Factor(R-Work) 0.1206
    R-Factor(R-Free) 0.1523
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.8147
    Shell Resolution(Low) 46.8487
    Number of Reflections(R-Free) 164
    Number of Reflections(R-Work) 2961
    R-Factor(R-Work) 0.1518
    R-Factor(R-Free) 0.212
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.008
    f_chiral_restr 0.078
    f_dihedral_angle_d 15.935
    f_angle_d 1.504
    f_bond_d 0.011
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 4288
    Nucleic Acid Atoms 531
    Heterogen Atoms 32
    Solvent Atoms 481
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) XDS
    Structure Solution PHENIX
    Structure Refinement PHENIX (PHENIX.REFINE)
     
    Software
    refinement PHENIX version: (PHENIX.REFINE)
    model building PHENIX