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X-RAY DIFFRACTION
Materials and Methods page
4BQA
  •   Crystallization Hide
    Crystallization Experiments
    Details 0.1 M BIS TRIS PH 5.5, 0.25 M NACL, 15% PEG 3350
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 36.67 α = 90
    b = 96.96 β = 97.06
    c = 83.8 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector PIXEL (PILATUS 6M)
    Type DECTRIS
    Collection Date 2013-04-19
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type DIAMOND BEAMLINE I02
    Wavelength 0.9795
    Site DIAMOND
    Beamline I02
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) -3.0
    Resolution(High) 2.5
    Resolution(Low) 48.5
    Number Reflections(Observed) 20136
    Percent Possible(Observed) 99.6
    R Merge I(Observed) 0.04
    B(Isotropic) From Wilson Plot 63.45
    Redundancy 3.8
     
    High Resolution Shell Details
    Resolution(High) 2.5
    Resolution(Low) 2.62
    Percent Possible(All) 99.9
    R Merge I(Observed) 0.67
    Mean I Over Sigma(Observed) 2.0
    Redundancy 3.9
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.5
    Resolution(Low) 48.482
    Cut-off Sigma(F) 0.01
    Number of Reflections(Observed) 19601
    Number of Reflections(R-Free) 1966
    Percent Reflections(Observed) 96.78
    R-Factor(Observed) 0.2349
    R-Work 0.2339
    R-Free 0.2554
     
    Temperature Factor Modeling
    Mean Isotropic B Value 67.9
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5001
    Shell Resolution(Low) 2.5626
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 2244
    R-Factor(R-Work) 0.3245
    R-Factor(R-Free) 0.3383
    Percent Reflections(Observed) 84.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5626
    Shell Resolution(Low) 2.6319
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 2443
    R-Factor(R-Work) 0.3136
    R-Factor(R-Free) 0.3725
    Percent Reflections(Observed) 91.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6319
    Shell Resolution(Low) 2.7094
    Number of Reflections(R-Free) 170
    Number of Reflections(R-Work) 2505
    R-Factor(R-Work) 0.3086
    R-Factor(R-Free) 0.3526
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.7094
    Shell Resolution(Low) 2.7968
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 2674
    R-Factor(R-Work) 0.301
    R-Factor(R-Free) 0.3528
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.7968
    Shell Resolution(Low) 2.8968
    Number of Reflections(R-Free) 119
    Number of Reflections(R-Work) 2691
    R-Factor(R-Work) 0.2976
    R-Factor(R-Free) 0.2659
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8968
    Shell Resolution(Low) 3.0127
    Number of Reflections(R-Free) 129
    Number of Reflections(R-Work) 2672
    R-Factor(R-Work) 0.2797
    R-Factor(R-Free) 0.3653
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0127
    Shell Resolution(Low) 3.1498
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 2638
    R-Factor(R-Work) 0.2587
    R-Factor(R-Free) 0.2631
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1498
    Shell Resolution(Low) 3.3159
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 2624
    R-Factor(R-Work) 0.2552
    R-Factor(R-Free) 0.3268
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.3159
    Shell Resolution(Low) 3.5235
    Number of Reflections(R-Free) 118
    Number of Reflections(R-Work) 2521
    R-Factor(R-Work) 0.2544
    R-Factor(R-Free) 0.303
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.5235
    Shell Resolution(Low) 3.7955
    Number of Reflections(R-Free) 133
    Number of Reflections(R-Work) 2699
    R-Factor(R-Work) 0.2225
    R-Factor(R-Free) 0.2605
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.7955
    Shell Resolution(Low) 4.1773
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 2707
    R-Factor(R-Work) 0.2124
    R-Factor(R-Free) 0.2235
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.1773
    Shell Resolution(Low) 4.7813
    Number of Reflections(R-Free) 145
    Number of Reflections(R-Work) 2638
    R-Factor(R-Work) 0.1958
    R-Factor(R-Free) 0.1952
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.7813
    Shell Resolution(Low) 6.0221
    Number of Reflections(R-Free) 177
    Number of Reflections(R-Work) 2658
    R-Factor(R-Work) 0.2068
    R-Factor(R-Free) 0.2134
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 6.0221
    Shell Resolution(Low) 48.4911
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 2679
    R-Factor(R-Work) 0.2329
    R-Factor(R-Free) 0.2627
    Percent Reflections(Observed) 99.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.002
    f_chiral_restr 0.041
    f_dihedral_angle_d 20.743
    f_angle_d 0.789
    f_bond_d 0.003
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2459
    Nucleic Acid Atoms 1212
    Heterogen Atoms 0
    Solvent Atoms 33
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) XDS
    Structure Solution MOLREP
    Structure Refinement PHENIX (PHENIX.REFINE)
     
    Software
    refinement PHENIX version: (PHENIX.REFINE)
    model building MOLREP