X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 5.5
Details MES 100 MM, PH 5.5, 50 % V/V MPD

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 207.51 α = 90
b = 207.51 β = 90
c = 137.04 γ = 90
Symmetry
Space Group P 43 21 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
IMAGE PLATE RIGAKU RAXIS IV PLUS PLUS OSMIC BLUE 2011-08-23
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE RIGAKU MICROMAX-007 HF -- -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.95 30 99.3 0.11 -- -- 4.1 -- 62655 -- 0.0 69.19
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.95 3.11 98.0 0.46 -- 2.8 4.1 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.95 29.3 -- 0.0 -- 62443 3166 98.76 -- 0.2678 0.2553 0.3044 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.95 3.03 -- 213 4088 0.2673 0.321 -- 98.76
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 76.5
Anisotropic B[1][1] -4.3768
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] -4.3768
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 8.7535
RMS Deviations
Key Refinement Restraint Deviation
t_other_torsion 24.56
t_bond_d 0.009
t_angle_deg 1.11
t_omega_torsion 2.36
Coordinate Error
Parameter Value
Luzzati ESD (Observed) 0.677
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 21335
Nucleic Acid Atoms 0
Heterogen Atoms 172
Solvent Atoms 302

Software

Software
Software Name Purpose
BUSTER refinement version: 2.10.0
XDS data reduction
SCALA data scaling
PHASER phasing