X-RAY DIFFRACTION Experimental Data & Validation


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Crystallization

Crystalization Experiments
pH 5.5
Details MES 100 MM, PH 5.5, 50 % V/V MPD

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 207.51 α = 90
b = 207.51 β = 90
c = 137.04 γ = 90
Symmetry
Space Group P 43 21 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
IMAGE PLATE (RAXIS IV PLUS PLUS) RIGAKU OSMIC BLUE 2011-08-23
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE RIGAKU MICROMAX-007 HF -- -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.95 30 99.3 0.11 -- -- 4.1 -- 62655 -- 0.0 69.19
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.95 3.11 98.0 0.46 -- 2.8 4.1 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.95 29.3 -- 0.0 -- 62443 3166 98.76 -- 0.2678 0.2553 0.3044 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.95 3.03 -- 213 4088 0.2673 0.321 -- 98.76
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 76.5
Anisotropic B[1][1] -4.3768
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] -4.3768
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 8.7535
RMS Deviations
Key Refinement Restraint Deviation
t_bond_d 0.009
t_angle_deg 1.11
t_omega_torsion 2.36
t_other_torsion 24.56
Coordinate Error
Parameter Value
Luzzati ESD (Observed) 0.677
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 21335
Nucleic Acid Atoms 0
Heterogen Atoms 172
Solvent Atoms 302

Software

Computing
Computing Package Purpose
XDS Data Reduction (intensity integration)
SCALA Data Reduction (data scaling)
PHASER Structure Solution
BUSTER 2.10.0 Structure Refinement
Software
Software Name Purpose
BUSTER version: 2.10.0 refinement
PHASER model building