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X-RAY DIFFRACTION
Materials and Methods page
4BGZ
  •   Crystallization Hide
    Crystallization Experiments
    Details BIS-TRIS PROPANE PH 7.5, 0.05 - 0.15 M K/NAPO4 (PH 7.0), 15-18% PEG 3350
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 70.48 α = 90
    b = 228.49 β = 113.88
    c = 71.32 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector PIXEL (PILATUS 6M)
    Type DECTRIS
    Collection Date 2012-03-10
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type DIAMOND BEAMLINE I03
    Wavelength 0.9763
    Site DIAMOND
    Beamline I03
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 2.1
    Resolution(High) 2.68
    Resolution(Low) 114.2
    Number Reflections(Observed) 57647
    Percent Possible(Observed) 100.0
    R Merge I(Observed) 0.09
    Redundancy 3.5
     
    High Resolution Shell Details
    Resolution(High) 2.68
    Resolution(Low) 2.82
    Percent Possible(All) 100.0
    R Merge I(Observed) 0.68
    Mean I Over Sigma(Observed) 2.1
    Redundancy 3.4
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.68
    Resolution(Low) 114.25
    Number of Reflections(Observed) 54721
    Number of Reflections(R-Free) 2926
    Percent Reflections(Observed) 99.98
    R-Factor(Observed) 0.21544
    R-Work 0.21388
    R-Free 0.24392
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 95.428
    Anisotropic B[1][1] -0.94
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] -1.05
    Anisotropic B[2][2] 6.89
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -3.94
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.68
    Shell Resolution(Low) 2.75
    Number of Reflections(R-Free) 198
    Number of Reflections(R-Work) 4091
    R-Factor(R-Work) 0.354
    R-Factor(R-Free) 0.378
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scbond_it 1.094
    r_mcangle_it 1.5
    r_mcbond_other 0.86
    r_mcbond_it 0.86
    r_gen_planes_other 0.002
    r_gen_planes_refined 0.003
    r_chiral_restr 0.056
    r_dihedral_angle_4_deg 18.373
    r_dihedral_angle_3_deg 14.914
    r_dihedral_angle_2_deg 36.341
    r_dihedral_angle_1_deg 5.126
    r_angle_other_deg 0.781
    r_angle_refined_deg 1.042
    r_bond_other_d 0.002
    r_bond_refined_d 0.005
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 11016
    Nucleic Acid Atoms 0
    Heterogen Atoms 76
    Solvent Atoms 398
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) SCALA
    Structure Solution PHASER
    Structure Refinement REFMAC 5.7.0032
     
    Software
    refinement REFMAC version: 5.7.0032
    model building PHASER