X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 242.44 α = 90
b = 242.44 β = 90
c = 110.36 γ = 120
Symmetry
Space Group H 3 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 6M -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SLS BEAMLINE X06SA -- SLS X06SA

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
3.3 40 99.4 0.31 -- -- 20.2 -- 18833 -- -- 81.51
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
3.3 3.47 97.4 -- -- 1.43 20.5 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 3.3 40.0 -- 1.99 -- 18833 941 99.4 -- 0.2299 0.2292 0.2443 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 3.3001 3.4738 -- 133 2519 0.3068 0.3093 -- 100.0
X Ray Diffraction 3.4738 3.6911 -- 134 2548 0.2592 0.3187 -- 100.0
X Ray Diffraction 3.6911 3.9754 -- 134 2534 0.2187 0.26 -- 100.0
X Ray Diffraction 3.9754 4.3743 -- 134 2544 0.1938 0.2265 -- 100.0
X Ray Diffraction 4.3743 5.0046 -- 134 2553 0.2004 0.1941 -- 100.0
X Ray Diffraction 5.0046 6.2949 -- 135 2569 0.241 0.2429 -- 100.0
X Ray Diffraction 6.2949 29.3238 -- 137 2625 0.2346 0.2454 -- 100.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 55.66
RMS Deviations
Key Refinement Restraint Deviation
f_chiral_restr 0.116
f_angle_d 1.601
f_bond_d 0.011
f_dihedral_angle_d 20.704
f_plane_restr 0.007
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2595
Nucleic Acid Atoms 0
Heterogen Atoms 96
Solvent Atoms 12

Software

Software
Software Name Purpose
PHENIX refinement version: (PHENIX.REFINE)
XDS data reduction
XSCALE data scaling
PHASER phasing version: MR