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X-RAY DIFFRACTION
Materials and Methods page
4BER
  •   Crystallization Hide
    Crystallization Experiments
    pH 8.5
    Details 15% PEG 20000, 0.1 M TRIS PH 8.5
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 58.33 α = 90
    b = 103.56 β = 90
    c = 224.1 γ = 90
     
    Space Group
    Space Group Name:    P 2 2 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD (QUANTUM 315R)
    Type ADSC
    Details MIRRORS
    Collection Date 2012-05-02
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type SOLEIL BEAMLINE PROXIMA 1
    Wavelength 0.9801
    Site SOLEIL
    Beamline PROXIMA 1
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 2.6
    Resolution(Low) 46.28
    Number Reflections(Observed) 42690
    Percent Possible(Observed) 99.6
    R Merge I(Observed) 0.1
    B(Isotropic) From Wilson Plot 62.69
    Redundancy 7.3
     
    High Resolution Shell Details
    Resolution(High) 2.6
    Resolution(Low) 2.76
    Percent Possible(All) 98.8
    R Merge I(Observed) 1.01
    Mean I Over Sigma(Observed) 2.3
    Redundancy 7.4
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.6
    Resolution(Low) 46.28
    Cut-off Sigma(F) 0.0
    Number of Reflections(Observed) 42690
    Number of Reflections(R-Free) 2135
    Percent Reflections(Observed) 99.8
    R-Factor(Observed) 0.2072
    R-Work 0.2056
    R-Free 0.2392
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 66.29
    Anisotropic B[1][1] -16.6577
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 15.291
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 1.3667
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6
    Shell Resolution(Low) 2.67
    Number of Reflections(R-Free) 155
    Number of Reflections(R-Work) 2941
    R-Factor(R-Work) 0.2397
    R-Factor(R-Free) 0.2704
    Percent Reflections(Observed) 99.8
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    t_bond_d 0.01
    t_angle_deg 1.18
    t_omega_torsion 2.67
    t_other_torsion 22.58
     
    Coordinate Error
    Luzzati ESD(Observed) 0.405
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 7578
    Nucleic Acid Atoms 0
    Heterogen Atoms 68
    Solvent Atoms 73
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) XDS
    Structure Solution PHASER
    Structure Refinement BUSTER 2.10.0
     
    Software
    refinement BUSTER version: 2.10.0
    model building PHASER