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X-RAY DIFFRACTION
Materials and Methods page
4BD6
  •   Crystallization Hide
    Crystallization Experiments
    Details 1.4 M SODIUM CITRATE, 0.1 M SODIUM CACODYLATE PH 5.75
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 103.71 α = 90
    b = 103.71 β = 90
    c = 40.56 γ = 90
     
    Space Group
    Space Group Name:    P 43 21 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC
    Collection Date 2012-02-14
     
    Diffraction Radiation
    Monochromator SI(111)
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type AUSTRALIAN SYNCHROTRON BEAMLINE MX2
    Wavelength 0.9537
    Site AUSTRALIAN SYNCHROTRON
    Beamline MX2
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) -3.0
    Resolution(High) 2.49
    Resolution(Low) 51.8
    Number Reflections(Observed) 8067
    Percent Possible(Observed) 98.9
    R Merge I(Observed) 0.06
    B(Isotropic) From Wilson Plot 72.9
    Redundancy 12.2
     
    High Resolution Shell Details
    Resolution(High) 2.49
    Resolution(Low) 2.85
    Percent Possible(All) 94.1
    R Merge I(Observed) 1.693
    Mean I Over Sigma(Observed) 1.45
    Redundancy 11.5
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.494
    Resolution(Low) 51.858
    Cut-off Sigma(F) 1.99
    Number of Reflections(Observed) 8067
    Number of Reflections(R-Free) 404
    Percent Reflections(Observed) 98.98
    R-Factor(Observed) 0.2482
    R-Work 0.2463
    R-Free 0.2853
     
    Temperature Factor Modeling
    Mean Isotropic B Value 83.2
    Anisotropic B[1][1] -0.0606
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -0.0606
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 0.1213
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4938
    Shell Resolution(Low) 2.8546
    Number of Reflections(R-Free) 130
    Number of Reflections(R-Work) 2444
    R-Factor(R-Work) 0.3183
    R-Factor(R-Free) 0.3799
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8546
    Shell Resolution(Low) 3.5964
    Number of Reflections(R-Free) 133
    Number of Reflections(R-Work) 2538
    R-Factor(R-Work) 0.2547
    R-Factor(R-Free) 0.3018
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.5964
    Shell Resolution(Low) 51.8687
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 2681
    R-Factor(R-Work) 0.2347
    R-Factor(R-Free) 0.2687
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.008
    f_chiral_restr 0.078
    f_dihedral_angle_d 15.174
    f_angle_d 1.48
    f_bond_d 0.012
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1305
    Nucleic Acid Atoms 0
    Heterogen Atoms 0
    Solvent Atoms 9
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) XDS
    Structure Solution PHASER
    Structure Refinement PHENIX (PHENIX.REFINE)
     
    Software
    refinement PHENIX version: (PHENIX.REFINE)
    model building PHASER