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X-RAY DIFFRACTION
Materials and Methods page
4BCY
  •   Crystallization Hide
    Crystallization Experiments
    Details 25% PEG 400, 0.1M NA ACETATE PH 4.6, 0.1 M CDCL2, 20 C
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 34.87 α = 90
    b = 47.91 β = 90
    c = 81.18 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD (165MM)
    Type MARRESEARCH
    Details HORIZONTALLY FOCUSING MIRROR
    Collection Date 2012-02-15
     
    Diffraction Radiation
    Monochromator BENT SI(111) CRYSTAL
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type MAX II BEAMLINE I911-2
    Wavelength 1.0
    Site MAX II
    Beamline I911-2
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 1.27
    Resolution(Low) 30
    Number Reflections(Observed) 36511
    Percent Possible(Observed) 99.9
    R Merge I(Observed) 0.05
    B(Isotropic) From Wilson Plot 20.82
    Redundancy 5.8
     
    High Resolution Shell Details
    Resolution(High) 1.27
    Resolution(Low) 1.3
    Percent Possible(All) 99.8
    R Merge I(Observed) 0.79
    Mean I Over Sigma(Observed) 2.3
    Redundancy 4.4
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.272
    Resolution(Low) 28.193
    Cut-off Sigma(F) 1.99
    Number of Reflections(Observed) 36503
    Number of Reflections(R-Free) 1825
    Percent Reflections(Observed) 99.87
    R-Factor(Observed) 0.1918
    R-Work 0.1912
    R-Free 0.2034
     
    Temperature Factor Modeling
    Data Not Available
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.2715
    Shell Resolution(Low) 1.3059
    Number of Reflections(R-Free) 131
    Number of Reflections(R-Work) 2631
    R-Factor(R-Work) 0.3016
    R-Factor(R-Free) 0.306
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.3059
    Shell Resolution(Low) 1.3443
    Number of Reflections(R-Free) 132
    Number of Reflections(R-Work) 2645
    R-Factor(R-Work) 0.277
    R-Factor(R-Free) 0.3083
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.3443
    Shell Resolution(Low) 1.3877
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 2607
    R-Factor(R-Work) 0.2458
    R-Factor(R-Free) 0.2964
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.3877
    Shell Resolution(Low) 1.4373
    Number of Reflections(R-Free) 133
    Number of Reflections(R-Work) 2628
    R-Factor(R-Work) 0.2342
    R-Factor(R-Free) 0.2796
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.4373
    Shell Resolution(Low) 1.4949
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 2640
    R-Factor(R-Work) 0.2143
    R-Factor(R-Free) 0.2064
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.4949
    Shell Resolution(Low) 1.5629
    Number of Reflections(R-Free) 124
    Number of Reflections(R-Work) 2647
    R-Factor(R-Work) 0.2038
    R-Factor(R-Free) 0.2253
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.5629
    Shell Resolution(Low) 1.6453
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 2663
    R-Factor(R-Work) 0.1955
    R-Factor(R-Free) 0.2209
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6453
    Shell Resolution(Low) 1.7484
    Number of Reflections(R-Free) 152
    Number of Reflections(R-Work) 2625
    R-Factor(R-Work) 0.1888
    R-Factor(R-Free) 0.2061
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.7484
    Shell Resolution(Low) 1.8833
    Number of Reflections(R-Free) 123
    Number of Reflections(R-Work) 2665
    R-Factor(R-Work) 0.1922
    R-Factor(R-Free) 0.2093
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8833
    Shell Resolution(Low) 2.0728
    Number of Reflections(R-Free) 137
    Number of Reflections(R-Work) 2688
    R-Factor(R-Work) 0.193
    R-Factor(R-Free) 0.1835
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0728
    Shell Resolution(Low) 2.3726
    Number of Reflections(R-Free) 150
    Number of Reflections(R-Work) 2681
    R-Factor(R-Work) 0.1909
    R-Factor(R-Free) 0.2018
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3726
    Shell Resolution(Low) 2.9887
    Number of Reflections(R-Free) 165
    Number of Reflections(R-Work) 2701
    R-Factor(R-Work) 0.2024
    R-Factor(R-Free) 0.2397
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.9887
    Shell Resolution(Low) 28.2002
    Number of Reflections(R-Free) 150
    Number of Reflections(R-Work) 2857
    R-Factor(R-Work) 0.1749
    R-Factor(R-Free) 0.1763
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.004
    f_chiral_restr 0.074
    f_dihedral_angle_d 13.306
    f_angle_d 1.096
    f_bond_d 0.006
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1068
    Nucleic Acid Atoms 0
    Heterogen Atoms 11
    Solvent Atoms 70
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) XSCALE
    Structure Solution PHASER
    Structure Refinement PHENIX (PHENIX.REFINE)
     
    Software
    refinement PHENIX version: (PHENIX.REFINE)
    model building PHASER