X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Details COCRYSTALS WERE GROWN IN 1-1.25M AMMONIUM SULFATE, 0.5-0.9M KCL, 100MM HEPES, PH 7.0, 5MM DTT AND IN THE PRESENCE OF COMPOUND.

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 77.08 α = 90
b = 141.16 β = 90
c = 155.52 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON DIAMOND BEAMLINE I04 -- DIAMOND I04

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.19 52.26 97.9 0.13 -- -- 3.2 -- 65528 -- -- 43.82
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.4 2.53 93.0 0.46 -- 1.65 2.91 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.4 48.662 -- 1.34 -- 65380 3315 97.45 -- 0.2171 0.2152 0.2518 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.4 2.4343 -- 114 2376 0.3205 0.3748 -- 90.0
X Ray Diffraction 2.4343 2.4706 -- 117 2363 0.3264 0.4227 -- 91.0
X Ray Diffraction 2.4706 2.5092 -- 130 2443 0.2972 0.3648 -- 93.0
X Ray Diffraction 2.5092 2.5504 -- 141 2465 0.3027 0.3502 -- 94.0
X Ray Diffraction 2.5504 2.5943 -- 133 2476 0.2781 0.3463 -- 95.0
X Ray Diffraction 2.5943 2.6415 -- 138 2502 0.2664 0.3016 -- 96.0
X Ray Diffraction 2.6415 2.6923 -- 127 2593 0.2698 0.3131 -- 98.0
X Ray Diffraction 2.6923 2.7473 -- 142 2548 0.2551 0.3338 -- 98.0
X Ray Diffraction 2.7473 2.807 -- 130 2618 0.2594 0.27 -- 99.0
X Ray Diffraction 2.807 2.8723 -- 144 2612 0.262 0.2857 -- 99.0
X Ray Diffraction 2.8723 2.9441 -- 128 2623 0.2594 0.3246 -- 99.0
X Ray Diffraction 2.9441 3.0237 -- 142 2600 0.2629 0.3058 -- 100.0
X Ray Diffraction 3.0237 3.1127 -- 125 2660 0.267 0.2936 -- 100.0
X Ray Diffraction 3.1127 3.2131 -- 144 2658 0.2539 0.3312 -- 100.0
X Ray Diffraction 3.2131 3.3279 -- 129 2611 0.2513 0.2966 -- 99.0
X Ray Diffraction 3.3279 3.4611 -- 132 2638 0.2294 0.2617 -- 100.0
X Ray Diffraction 3.4611 3.6186 -- 163 2622 0.2144 0.2518 -- 99.0
X Ray Diffraction 3.6186 3.8093 -- 182 2604 0.2006 0.2434 -- 100.0
X Ray Diffraction 3.8093 4.0479 -- 148 2647 0.1844 0.2295 -- 99.0
X Ray Diffraction 4.0479 4.3602 -- 138 2649 0.1722 0.2092 -- 99.0
X Ray Diffraction 4.3602 4.7987 -- 145 2651 0.1504 0.2106 -- 99.0
X Ray Diffraction 4.7987 5.4922 -- 153 2636 0.1578 0.1927 -- 98.0
X Ray Diffraction 5.4922 6.9164 -- 127 2618 0.2106 0.2324 -- 95.0
X Ray Diffraction 6.9164 48.6723 -- 143 2852 0.1849 0.1685 -- 99.0
Temperature Factor Modeling
Temperature Factor Value
Anisotropic B[1][1] 3.3092
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] -0.4663
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -2.8428
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.004
f_chiral_restr 0.056
f_dihedral_angle_d 14.024
f_angle_d 0.8
f_bond_d 0.004
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 8843
Nucleic Acid Atoms 0
Heterogen Atoms 62
Solvent Atoms 331

Software

Computing
Computing Package Purpose
PHASER Structure Solution
PHENIX (PHENIX.REFINE) Structure Refinement
Software
Software Name Purpose
PHENIX version: (PHENIX.REFINE) refinement
PHASER model building