X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 7
Details COCRYSTALS WERE GROWN IN 1-1.25M AMMONIUM SULFATE, 0.5-0.9M KCL, 100MM HEPES, PH 7.0, 5MM DTT AND IN THE PRESENCE OF COMPOUND.

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 73.9 α = 90
b = 133.81 β = 90
c = 148.38 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON DIAMOND BEAMLINE I03 -- DIAMOND I03

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.58 52.36 99.2 0.08 -- -- 3.22 -- 92057 -- -- 32.61
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.05 2.16 99.4 0.54 -- 1.41 3.29 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.05 49.599 -- 0.0 -- 91969 4595 98.96 -- 0.1906 0.1887 0.226 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.05 2.0733 -- 175 2809 0.2492 0.2848 -- 98.0
X Ray Diffraction 2.0733 2.0977 -- 149 2901 0.2431 0.2987 -- 100.0
X Ray Diffraction 2.0977 2.1233 -- 152 2930 0.2428 0.293 -- 100.0
X Ray Diffraction 2.1233 2.1502 -- 145 2903 0.2329 0.2629 -- 100.0
X Ray Diffraction 2.1502 2.1785 -- 145 2900 0.221 0.3085 -- 100.0
X Ray Diffraction 2.1785 2.2083 -- 135 2888 0.2151 0.2345 -- 100.0
X Ray Diffraction 2.2083 2.2398 -- 144 2965 0.2227 0.2972 -- 100.0
X Ray Diffraction 2.2398 2.2733 -- 169 2831 0.2173 0.2741 -- 99.0
X Ray Diffraction 2.2733 2.3088 -- 129 2945 0.2091 0.2342 -- 100.0
X Ray Diffraction 2.3088 2.3467 -- 174 2876 0.2076 0.2714 -- 99.0
X Ray Diffraction 2.3467 2.3871 -- 136 2880 0.2171 0.2675 -- 98.0
X Ray Diffraction 2.3871 2.4305 -- 148 2868 0.221 0.2653 -- 99.0
X Ray Diffraction 2.4305 2.4773 -- 162 2911 0.2193 0.3042 -- 100.0
X Ray Diffraction 2.4773 2.5278 -- 143 2911 0.2079 0.263 -- 100.0
X Ray Diffraction 2.5278 2.5828 -- 184 2865 0.196 0.2156 -- 100.0
X Ray Diffraction 2.5828 2.6429 -- 144 2959 0.1888 0.2108 -- 99.0
X Ray Diffraction 2.6429 2.709 -- 154 2872 0.1935 0.2369 -- 99.0
X Ray Diffraction 2.709 2.7822 -- 159 2929 0.2031 0.237 -- 99.0
X Ray Diffraction 2.7822 2.8641 -- 130 2890 0.2057 0.2539 -- 99.0
X Ray Diffraction 2.8641 2.9565 -- 159 2888 0.208 0.2339 -- 97.0
X Ray Diffraction 2.9565 3.0621 -- 146 2902 0.1893 0.2349 -- 99.0
X Ray Diffraction 3.0621 3.1847 -- 160 2926 0.188 0.2274 -- 100.0
X Ray Diffraction 3.1847 3.3296 -- 139 2941 0.1821 0.1958 -- 99.0
X Ray Diffraction 3.3296 3.5051 -- 175 2899 0.1749 0.2054 -- 99.0
X Ray Diffraction 3.5051 3.7247 -- 145 2877 0.1708 0.2097 -- 97.0
X Ray Diffraction 3.7247 4.0122 -- 170 2888 0.1675 0.1839 -- 98.0
X Ray Diffraction 4.0122 4.4157 -- 157 2964 0.1568 0.1948 -- 99.0
X Ray Diffraction 4.4157 5.0541 -- 161 2974 0.1525 0.1905 -- 99.0
X Ray Diffraction 5.0541 6.3655 -- 144 3000 0.1932 0.2649 -- 98.0
X Ray Diffraction 6.3655 49.6138 -- 162 3082 0.1856 0.1985 -- 97.0
Temperature Factor Modeling
Temperature Factor Value
Anisotropic B[1][1] -0.7662
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] -0.0647
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 0.8309
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.004
f_chiral_restr 0.061
f_dihedral_angle_d 14.168
f_angle_d 0.902
f_bond_d 0.005
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 8722
Nucleic Acid Atoms 0
Heterogen Atoms 100
Solvent Atoms 519

Software

Computing
Computing Package Purpose
PHASER Structure Solution
PHENIX (PHENIX.REFINE) Structure Refinement
Software
Software Name Purpose
PHENIX version: (PHENIX.REFINE) refinement
PHASER model building