X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 7
Details COCRYSTALS WERE GROWN IN 1-1.25M AMMONIUM SULFATE, 0.5-0.9M KCL, 100MM HEPES, PH 7.0, 5MM DTT AND IN THE PRESENCE OF COMPOUND.

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 77.2 α = 90
b = 140.37 β = 90
c = 155.17 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON DIAMOND BEAMLINE I04 -- DIAMOND I04

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.05 29.86 96.5 0.04 -- -- 3.74 -- 101828 -- -- 38.86
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.05 2.16 83.6 0.54 -- 1.45 2.94 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.052 29.863 -- 1.34 -- 101785 5083 96.07 -- 0.1954 0.1932 0.2358 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.0521 2.0754 -- 110 2288 0.3217 0.3747 -- 69.0
X Ray Diffraction 2.0754 2.0998 -- 145 2729 0.3148 0.3304 -- 82.0
X Ray Diffraction 2.0998 2.1254 -- 138 2879 0.2965 0.343 -- 86.0
X Ray Diffraction 2.1254 2.1523 -- 151 2984 0.2836 0.3477 -- 90.0
X Ray Diffraction 2.1523 2.1806 -- 152 3098 0.2709 0.3179 -- 93.0
X Ray Diffraction 2.1806 2.2105 -- 195 3229 0.2487 0.296 -- 97.0
X Ray Diffraction 2.2105 2.2421 -- 167 3293 0.2381 0.2942 -- 99.0
X Ray Diffraction 2.2421 2.2755 -- 184 3339 0.2259 0.2677 -- 100.0
X Ray Diffraction 2.2755 2.3111 -- 163 3280 0.2184 0.2876 -- 100.0
X Ray Diffraction 2.3111 2.3489 -- 188 3332 0.2209 0.2966 -- 100.0
X Ray Diffraction 2.3489 2.3894 -- 212 3240 0.2061 0.2954 -- 100.0
X Ray Diffraction 2.3894 2.4329 -- 157 3343 0.1991 0.2417 -- 100.0
X Ray Diffraction 2.4329 2.4796 -- 182 3312 0.1913 0.2273 -- 100.0
X Ray Diffraction 2.4796 2.5302 -- 156 3314 0.1949 0.2556 -- 100.0
X Ray Diffraction 2.5302 2.5852 -- 191 3357 0.2004 0.2385 -- 100.0
X Ray Diffraction 2.5852 2.6453 -- 163 3319 0.2107 0.2473 -- 100.0
X Ray Diffraction 2.6453 2.7114 -- 174 3333 0.2195 0.2738 -- 99.0
X Ray Diffraction 2.7114 2.7847 -- 172 3313 0.2225 0.2766 -- 100.0
X Ray Diffraction 2.7847 2.8666 -- 179 3344 0.2232 0.2583 -- 99.0
X Ray Diffraction 2.8666 2.959 -- 166 3319 0.2154 0.2863 -- 99.0
X Ray Diffraction 2.959 3.0647 -- 165 3341 0.2226 0.2666 -- 99.0
X Ray Diffraction 3.0647 3.1872 -- 188 3307 0.2238 0.259 -- 99.0
X Ray Diffraction 3.1872 3.3321 -- 188 3339 0.2149 0.2648 -- 99.0
X Ray Diffraction 3.3321 3.5075 -- 157 3314 0.1942 0.2447 -- 98.0
X Ray Diffraction 3.5075 3.7269 -- 170 3311 0.1784 0.2262 -- 98.0
X Ray Diffraction 3.7269 4.014 -- 173 3299 0.1676 0.2172 -- 97.0
X Ray Diffraction 4.014 4.4168 -- 174 3253 0.1495 0.1928 -- 96.0
X Ray Diffraction 4.4168 5.0533 -- 170 3295 0.1341 0.182 -- 96.0
X Ray Diffraction 5.0533 6.3565 -- 165 3309 0.1714 0.2043 -- 95.0
X Ray Diffraction 6.3565 29.8666 -- 188 3289 0.1855 0.1827 -- 92.0
Temperature Factor Modeling
Temperature Factor Value
Anisotropic B[1][1] -2.007
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 2.7655
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -0.7585
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.007
f_chiral_restr 0.113
f_dihedral_angle_d 18.07
f_angle_d 1.675
f_bond_d 0.023
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 8887
Nucleic Acid Atoms 0
Heterogen Atoms 60
Solvent Atoms 629

Software

Computing
Computing Package Purpose
PHASER Structure Solution
PHENIX (PHENIX.REFINE) Structure Refinement
Software
Software Name Purpose
PHENIX version: (PHENIX.REFINE) refinement
PHASER model building