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X-RAY DIFFRACTION
Materials and Methods page
4BCJ
  •   Crystallization Hide
    Crystallization Experiments
    pH 6.2
    Details CRYSTALS WERE GROWN AT 4C USING 10-16% PEG 1000, 100MM NAK-PHOSPHATE PH 6.2, 500MM NACL, 4MM TCEP AS THE PRECIPITANT SOLUTION. THEY WERE SUBSEQUENTLY SOAKED IN THE PRESENCE OF COMPOUND.
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 174.59 α = 90
    b = 174.59 β = 90
    c = 99.42 γ = 120
     
    Space Group
    Space Group Name:    H 3
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD (QUANTUM 315R)
    Type ADSC
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ESRF BEAMLINE ID14-4
    Wavelength 0.933
    Site ESRF
    Beamline ID14-4
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 3.16
    Resolution(Low) 50.4
    Number Reflections(Observed) 19246
    Percent Possible(Observed) 99.6
    R Merge I(Observed) 0.1
    Redundancy 3.61
     
    High Resolution Shell Details
    Resolution(High) 3.16
    Resolution(Low) 3.33
    Percent Possible(All) 99.0
    R Merge I(Observed) 0.55
    Mean I Over Sigma(Observed) 1.41
    Redundancy 3.53
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method OTHER
    reflnsShellList 3.162
    Resolution(Low) 38.668
    Number of Reflections(Observed) 19245
    Number of Reflections(R-Free) 973
    Percent Reflections(Observed) 99.535
    R-Factor(Observed) 0.162
    R-Work 0.1594
    R-Free 0.2073
     
    Temperature Factor Modeling
    Mean Isotropic B Value 101.642
    Anisotropic B[1][1] -2.509
    Anisotropic B[1][2] -2.509
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -2.509
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 8.138
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.162
    Shell Resolution(Low) 3.244
    Number of Reflections(R-Free) 80
    Number of Reflections(R-Work) 1325
    R-Factor(R-Work) 0.298
    R-Factor(R-Free) 0.332
    Percent Reflections(Observed) 97.978
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 11.827
    r_scbond_it 13.112
    r_mcangle_it 8.955
    r_mcbond_it 6.308
    r_nbd_refined 0.278
    r_gen_planes_refined 0.008
    r_chiral_restr 0.098
    r_dihedral_angle_4_deg 20.364
    r_dihedral_angle_3_deg 18.03
    r_dihedral_angle_2_deg 32.825
    r_dihedral_angle_1_deg 5.543
    r_angle_refined_deg 1.379
    r_bond_refined_d 0.01
    r_nbtor_refined 0.359
    r_xyhbond_nbd_refined 0.165
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 4568
    Nucleic Acid Atoms 0
    Heterogen Atoms 24
    Solvent Atoms 6
     
     
  •   Software and Computing Hide
    Computing
    Structure Solution PHENIX
    Structure Refinement REFMAC 5.7.0029
     
    Software
    refinement REFMAC version: 5.7.0029
    model building PHENIX