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An Information Portal to 105097 Biological Macromolecular Structures

X-RAY DIFFRACTION
Materials and Methods page
4BCI
  •   Crystallization Hide
    Crystallization Experiments
    pH 6.2
    Details CRYSTALS WERE GROWN AT 4C USING 10-16% PEG 1000, 100MM NAK-PHOSPHATE PH 6.2, 500MM NACL, 4MM TCEP AS THE PRECIPITANT SOLUTION. THEY WERE SUBSEQUENTLY SOAKED IN THE PRESENCE OF COMPOUND.
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 174.11 α = 90
    b = 174.11 β = 90
    c = 99.26 γ = 120
     
    Space Group
    Space Group Name:    H 3
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type DIAMOND BEAMLINE I02
    Wavelength 0.979
    Site DIAMOND
    Beamline I02
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 2.97
    Resolution(Low) 60.04
    Number Reflections(Observed) 20202
    Percent Possible(Observed) 99.3
    R Merge I(Observed) 0.06
    Redundancy 3.63
     
    High Resolution Shell Details
    Resolution(High) 3.1
    Resolution(Low) 3.27
    Percent Possible(All) 99.5
    R Merge I(Observed) 0.59
    Mean I Over Sigma(Observed) 1.29
    Redundancy 3.68
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method OTHER
    reflnsShellList 3.1
    Resolution(Low) 37.428
    Number of Reflections(Observed) 20201
    Number of Reflections(R-Free) 1024
    Percent Reflections(Observed) 99.292
    R-Factor(Observed) 0.18
    R-Work 0.1777
    R-Free 0.2213
     
    Temperature Factor Modeling
    Mean Isotropic B Value 110.632
    Anisotropic B[1][1] -4.036
    Anisotropic B[1][2] -4.036
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -4.036
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 13.093
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1
    Shell Resolution(Low) 3.18
    Number of Reflections(R-Free) 82
    Number of Reflections(R-Work) 1393
    R-Factor(R-Work) 0.326
    R-Factor(R-Free) 0.429
    Percent Reflections(Observed) 99.595
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 12.045
    r_scbond_it 7.943
    r_mcangle_it 13.678
    r_mcbond_other 1.688
    r_mcbond_it 6.644
    r_nbd_refined 0.355
    r_gen_planes_other 0.001
    r_gen_planes_refined 0.007
    r_chiral_restr 0.073
    r_dihedral_angle_4_deg 16.85
    r_dihedral_angle_3_deg 15.486
    r_dihedral_angle_2_deg 33.551
    r_dihedral_angle_1_deg 4.964
    r_angle_other_deg 0.625
    r_angle_refined_deg 1.125
    r_bond_other_d 0.001
    r_bond_refined_d 0.009
    r_nbd_other 0.193
    r_nbtor_refined 0.207
    r_xyhbond_nbd_refined 0.222
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 4562
    Nucleic Acid Atoms 0
    Heterogen Atoms 27
    Solvent Atoms 8
     
     
  •   Software and Computing Hide
    Computing
    Structure Solution PHENIX
    Structure Refinement REFMAC 5.7.0029
     
    Software
    refinement REFMAC version: 5.7.0029
    model building PHENIX