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X-RAY DIFFRACTION
Materials and Methods page
4BBZ
  •   Crystallization Hide
    Crystallization Experiments
    pH 6.5
    Details PROTEIN WAS CRYSTALLIZED FROM 2.1 M AMMONIUM SULFATE, 0.1 M MES BUFFER PH 6.5.
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 154.68 α = 90
    b = 154.68 β = 90
    c = 126.99 γ = 90
     
    Space Group
    Space Group Name:    I 4 2 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD (QUANTUM 315R)
    Type ADSC
    Collection Date 2010-04-15
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ESRF BEAMLINE ID14-4
    Wavelength 0.9765
    Site ESRF
    Beamline ID14-4
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) -3.0
    Resolution(High) 2.7
    Resolution(Low) 54.7
    Number Reflections(Observed) 21049
    Percent Possible(Observed) 98.1
    R Merge I(Observed) 0.07
    Redundancy 10.1
     
    High Resolution Shell Details
    Resolution(High) 2.7
    Resolution(Low) 2.8
    Percent Possible(All) 99.0
    R Merge I(Observed) 0.46
    Mean I Over Sigma(Observed) 5.2
    Redundancy 9.2
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.7
    Resolution(Low) 54.688
    Cut-off Sigma(F) 1.35
    Number of Reflections(Observed) 21049
    Number of Reflections(R-Free) 1053
    Percent Reflections(Observed) 98.14
    R-Factor(Observed) 0.1693
    R-Work 0.1663
    R-Free 0.2248
     
    Temperature Factor Modeling
    Data Not Available
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.7001
    Shell Resolution(Low) 2.823
    Number of Reflections(R-Free) 130
    Number of Reflections(R-Work) 2470
    R-Factor(R-Work) 0.2015
    R-Factor(R-Free) 0.2752
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.823
    Shell Resolution(Low) 2.9718
    Number of Reflections(R-Free) 131
    Number of Reflections(R-Work) 2477
    R-Factor(R-Work) 0.1983
    R-Factor(R-Free) 0.2715
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.9718
    Shell Resolution(Low) 3.158
    Number of Reflections(R-Free) 131
    Number of Reflections(R-Work) 2495
    R-Factor(R-Work) 0.1853
    R-Factor(R-Free) 0.2914
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.158
    Shell Resolution(Low) 3.4018
    Number of Reflections(R-Free) 130
    Number of Reflections(R-Work) 2464
    R-Factor(R-Work) 0.1768
    R-Factor(R-Free) 0.2329
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.4018
    Shell Resolution(Low) 3.744
    Number of Reflections(R-Free) 130
    Number of Reflections(R-Work) 2475
    R-Factor(R-Work) 0.1545
    R-Factor(R-Free) 0.2021
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.744
    Shell Resolution(Low) 4.2856
    Number of Reflections(R-Free) 131
    Number of Reflections(R-Work) 2503
    R-Factor(R-Work) 0.143
    R-Factor(R-Free) 0.2186
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.2856
    Shell Resolution(Low) 5.3987
    Number of Reflections(R-Free) 133
    Number of Reflections(R-Work) 2510
    R-Factor(R-Work) 0.1454
    R-Factor(R-Free) 0.1948
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.3987
    Shell Resolution(Low) 54.6988
    Number of Reflections(R-Free) 137
    Number of Reflections(R-Work) 2602
    R-Factor(R-Work) 0.1815
    R-Factor(R-Free) 0.2212
    Percent Reflections(Observed) 96.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.004
    f_chiral_restr 0.088
    f_dihedral_angle_d 19.883
    f_angle_d 1.269
    f_bond_d 0.008
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 4202
    Nucleic Acid Atoms 0
    Heterogen Atoms 186
    Solvent Atoms 139
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) XSCALE
    Structure Solution MOLREP
    Structure Refinement PHENIX (PHENIX.REFINE: 1.8.1_1168)
     
    Software
    refinement PHENIX version: (PHENIX.REFINE: 1.8.1_1168)
    model building MOLREP