X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 222.17 α = 90
b = 386.01 β = 90
c = 254.47 γ = 90
Symmetry
Space Group C 2 2 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL PILATUS 6M -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SLS BEAMLINE X06SA -- SLS X06SA

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
3.6 50 99.9 0.23 -- -- 7.5 -- 126022 -- 2.0 86.97

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 3.6 49.273 -- 1.99 -- 125981 2519 99.95 -- 0.1855 0.1847 0.225 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 3.5999 3.6692 -- 140 6800 0.2982 0.343 -- 100.0
X Ray Diffraction 3.6692 3.744 -- 136 6784 0.2769 0.3054 -- 100.0
X Ray Diffraction 3.744 3.8254 -- 139 6802 0.2606 0.3085 -- 100.0
X Ray Diffraction 3.8254 3.9144 -- 142 6819 0.2497 0.2858 -- 100.0
X Ray Diffraction 3.9144 4.0122 -- 137 6813 0.2331 0.2842 -- 100.0
X Ray Diffraction 4.0122 4.1206 -- 140 6834 0.2089 0.238 -- 100.0
X Ray Diffraction 4.1206 4.2418 -- 138 6773 0.1879 0.2427 -- 100.0
X Ray Diffraction 4.2418 4.3787 -- 140 6845 0.1692 0.216 -- 100.0
X Ray Diffraction 4.3787 4.535 -- 137 6826 0.1477 0.1951 -- 100.0
X Ray Diffraction 4.535 4.7165 -- 142 6833 0.1421 0.1646 -- 100.0
X Ray Diffraction 4.7165 4.931 -- 138 6835 0.1433 0.1758 -- 100.0
X Ray Diffraction 4.931 5.1907 -- 141 6874 0.1555 0.2041 -- 100.0
X Ray Diffraction 5.1907 5.5155 -- 140 6835 0.1681 0.209 -- 100.0
X Ray Diffraction 5.5155 5.9407 -- 140 6884 0.1808 0.2254 -- 100.0
X Ray Diffraction 5.9407 6.5373 -- 140 6898 0.1877 0.2378 -- 100.0
X Ray Diffraction 6.5373 7.4804 -- 141 6899 0.167 0.2085 -- 100.0
X Ray Diffraction 7.4804 9.4138 -- 142 6985 0.1414 0.1952 -- 100.0
X Ray Diffraction 9.4138 49.2778 -- 146 7123 0.1937 0.211 -- 99.0
Temperature Factor Modeling
Temperature Factor Value
Anisotropic B[1][1] -8.364
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] -0.8756
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -12.6202
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.004
f_chiral_restr 0.075
f_dihedral_angle_d 17.621
f_angle_d 1.12
f_bond_d 0.008
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 32797
Nucleic Acid Atoms 612
Heterogen Atoms 11
Solvent Atoms 0

Software

Computing
Computing Package Purpose
PHENIX (PHENIX.REFINE) Structure Refinement
Software
Software Name Purpose
PHENIX version: (PHENIX.REFINE) refinement