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X-RAY DIFFRACTION
Materials and Methods page
4BBK
  •   Crystallization Hide
    Crystallization Experiments
    pH 7.5
    Details 5MG/ML - 12MG/ML IN 20MM TRIS-HCL, PH 7.5, 200MM NACL, 0.5MM TCEP
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 45.29 α = 90
    b = 82.78 β = 90
    c = 95.99 γ = 90
     
    Space Group
    Space Group Name:    C 2 2 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC
    Details SI (111) DOUBLE CRYSTAL MONOCHROMATOR. KIRKPATRICK BAEZ BIMORPH MIRROR PAIR FOR HORIZONTAL AND VERTICAL FOCUSSING
     
    Diffraction Radiation
    Monochromator DOUBLE CRYSTAL
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type DIAMOND BEAMLINE I03
    Wavelength 0.9745
    Site DIAMOND
    Beamline I03
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 3.5
    Resolution(High) 2.1
    Resolution(Low) 40
    Number Reflections(Observed) 10324
    Percent Possible(Observed) 95.4
    R Merge I(Observed) 0.08
    B(Isotropic) From Wilson Plot 32.2
    Redundancy 7.0
     
    High Resolution Shell Details
    Resolution(High) 2.1
    Resolution(Low) 2.21
    Percent Possible(All) 95.2
    R Merge I(Observed) 0.56
    Mean I Over Sigma(Observed) 3.5
    Redundancy 7.3
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.1
    Resolution(Low) 39.732
    Cut-off Sigma(F) 1.35
    Number of Reflections(Observed) 10323
    Number of Reflections(R-Free) 483
    Percent Reflections(Observed) 94.83
    R-Factor(Observed) 0.1835
    R-Work 0.1821
    R-Free 0.2131
     
    Temperature Factor Modeling
    Mean Isotropic B Value 42.4
    Anisotropic B[1][1] -2.6955
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 14.2707
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -11.5752
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1003
    Shell Resolution(Low) 2.4041
    Number of Reflections(R-Free) 169
    Number of Reflections(R-Work) 3213
    R-Factor(R-Work) 0.1988
    R-Factor(R-Free) 0.2266
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4041
    Shell Resolution(Low) 3.0288
    Number of Reflections(R-Free) 161
    Number of Reflections(R-Work) 3256
    R-Factor(R-Work) 0.1828
    R-Factor(R-Free) 0.2284
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0288
    Shell Resolution(Low) 39.7393
    Number of Reflections(R-Free) 153
    Number of Reflections(R-Work) 3371
    R-Factor(R-Work) 0.178
    R-Factor(R-Free) 0.203
    Percent Reflections(Observed) 95.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.005
    f_chiral_restr 0.068
    f_dihedral_angle_d 14.77
    f_angle_d 1.011
    f_bond_d 0.008
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 977
    Nucleic Acid Atoms 0
    Heterogen Atoms 6
    Solvent Atoms 49
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) IMOSFLM
    Data Reduction (data scaling) SCALA
    Structure Solution PHASER
    Structure Refinement PHENIX (PHENIX.REFINE)
     
    Software
    refinement PHENIX version: (PHENIX.REFINE)
    model building PHASER