POP-OUT | CLOSE

An Information Portal to 105212 Biological Macromolecular Structures

X-RAY DIFFRACTION
Materials and Methods page
4BBC
  •   Crystallization Hide
    Crystallization Experiments
    pH 7
    Details pH 7
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 69.91 α = 90
    b = 108.92 β = 110.8
    c = 71.57 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD (QUANTUM 315)
    Type ADSC
    Details KIRKPATRICK BAEZ BIMORPH MIRROR PAIR FOR HORIZONTAL AND VERTICAL FOCUSSING
    Collection Date 2008-09-12
     
    Diffraction Radiation
    Monochromator DOUBLE SI(111) CRYSTAL
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type DIAMOND BEAMLINE I03
    Wavelength 0.9900
    Site DIAMOND
    Beamline I03
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) -3.0
    Resolution(High) 3.1
    Resolution(Low) 50
    Number Reflections(Observed) 18280
    Percent Possible(Observed) 99.8
    R Merge I(Observed) 0.07
    B(Isotropic) From Wilson Plot 107.94
    Redundancy 3.8
     
    High Resolution Shell Details
    Resolution(High) 3.1
    Resolution(Low) 3.15
    Percent Possible(All) 99.6
    R Merge I(Observed) 0.74
    Mean I Over Sigma(Observed) 1.7
    Redundancy 3.8
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 3.1
    Resolution(Low) 41.84
    Cut-off Sigma(F) 0.0
    Number of Reflections(Observed) 18233
    Number of Reflections(R-Free) 926
    R-Factor(Observed) 0.1739
    R-Work 0.1729
    R-Free 0.193
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 111.91
    Anisotropic B[1][1] 15.9527
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] -14.548
    Anisotropic B[2][2] 4.8149
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -20.7676
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1
    Shell Resolution(Low) 3.29
    Number of Reflections(R-Free) 156
    Number of Reflections(R-Work) 2746
    R-Factor(R-Work) 0.2407
    R-Factor(R-Free) 0.26
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    t_bond_d 0.01
    t_angle_deg 1.04
    t_omega_torsion 2.23
    t_other_torsion 20.72
     
    Coordinate Error
    Luzzati ESD(Observed) 0.744
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 5711
    Nucleic Acid Atoms 0
    Heterogen Atoms 0
    Solvent Atoms 0
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) HKL2000
    Data Reduction (data scaling) HKL2000
    Structure Solution BUSTER-TNT
    Structure Refinement BUSTER 2.8.0
     
    Software
    refinement BUSTER version: 2.8.0
    model building BUSTER-TNT