X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 97.12 α = 90
b = 113 β = 98.55
c = 194.44 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD MARMOSAIC 225 mm CCD -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SLS BEAMLINE X10SA -- SLS X10SA

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.55 25 99.6 0.09 -- -- 3.8 -- 134887 -- 2.0 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.55 24.996 -- 1.36 -- 134887 6741 99.64 -- 0.2076 0.206 0.2358 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.55 2.5789 -- 223 4245 0.3327 0.3481 -- 100.0
X Ray Diffraction 2.5789 2.6093 -- 226 4284 0.3048 0.346 -- 100.0
X Ray Diffraction 2.6093 2.641 -- 223 4240 0.2973 0.324 -- 100.0
X Ray Diffraction 2.641 2.6744 -- 225 4271 0.2958 0.3419 -- 100.0
X Ray Diffraction 2.6744 2.7096 -- 226 4301 0.2836 0.304 -- 100.0
X Ray Diffraction 2.7096 2.7467 -- 221 4197 0.2753 0.3069 -- 100.0
X Ray Diffraction 2.7467 2.7859 -- 225 4283 0.2748 0.2995 -- 100.0
X Ray Diffraction 2.7859 2.8274 -- 223 4238 0.2625 0.3098 -- 100.0
X Ray Diffraction 2.8274 2.8715 -- 226 4294 0.2509 0.2795 -- 100.0
X Ray Diffraction 2.8715 2.9185 -- 226 4289 0.2455 0.2864 -- 100.0
X Ray Diffraction 2.9185 2.9688 -- 222 4215 0.2342 0.2531 -- 100.0
X Ray Diffraction 2.9688 3.0226 -- 225 4275 0.242 0.2826 -- 100.0
X Ray Diffraction 3.0226 3.0807 -- 224 4254 0.2435 0.2776 -- 100.0
X Ray Diffraction 3.0807 3.1434 -- 226 4306 0.2325 0.2716 -- 100.0
X Ray Diffraction 3.1434 3.2117 -- 224 4251 0.2259 0.2604 -- 100.0
X Ray Diffraction 3.2117 3.2862 -- 225 4278 0.2174 0.2496 -- 100.0
X Ray Diffraction 3.2862 3.3682 -- 224 4256 0.2109 0.2355 -- 100.0
X Ray Diffraction 3.3682 3.459 -- 228 4330 0.2056 0.2516 -- 100.0
X Ray Diffraction 3.459 3.5606 -- 223 4232 0.2122 0.2631 -- 100.0
X Ray Diffraction 3.5606 3.6751 -- 224 4251 0.2069 0.2575 -- 100.0
X Ray Diffraction 3.6751 3.8061 -- 225 4279 0.1967 0.2324 -- 100.0
X Ray Diffraction 3.8061 3.9579 -- 225 4282 0.181 0.2013 -- 100.0
X Ray Diffraction 3.9579 4.1372 -- 224 4256 0.16 0.1704 -- 99.0
X Ray Diffraction 4.1372 4.3543 -- 225 4281 0.1506 0.1713 -- 99.0
X Ray Diffraction 4.3543 4.6255 -- 224 4254 0.1493 0.1695 -- 99.0
X Ray Diffraction 4.6255 4.98 -- 224 4256 0.1586 0.1717 -- 99.0
X Ray Diffraction 4.98 5.4764 -- 224 4271 0.1724 0.1946 -- 99.0
X Ray Diffraction 5.4764 6.258 -- 224 4283 0.1971 0.2188 -- 99.0
X Ray Diffraction 6.258 7.8438 -- 227 4308 0.1891 0.2199 -- 99.0
X Ray Diffraction 7.8438 24.9969 -- 230 4386 0.1655 0.1974 -- 99.0
Temperature Factor Modeling
Temperature Factor Value
Anisotropic B[1][1] -4.7082
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] -1.3655
Anisotropic B[2][2] 3.2116
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 1.4966
RMS Deviations
Key Refinement Restraint Deviation
f_angle_d 1.321
f_plane_restr 0.009
f_bond_d 0.01
f_dihedral_angle_d 15.482
f_chiral_restr 0.089
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 26270
Nucleic Acid Atoms 0
Heterogen Atoms 8
Solvent Atoms 1076

Software

Software
Software Name Purpose
PHENIX refinement version: (PHENIX.REFINE)
XDS data reduction
XSCALE data scaling
MOLREP phasing