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X-RAY DIFFRACTION
Materials and Methods page
4BAR
  •   Crystallization Hide
    Crystallization Experiments
    pH 6.5
    Details 0.1 M BIS-TRIS PROPANE PH 6.5, 0.3-0.9 M SODIUM POTASSIUM TARTRATE, 0.0006 M PROTEIN, 0.0014 M LANTHANIDE COMPLEX, 293 K, 5 DAYS
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 57.85 α = 90
    b = 57.85 β = 90
    c = 150.21 γ = 90
     
    Space Group
    Space Group Name:    P 41 21 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD (QUANTUM 315)
    Type ADSC
    Details MIRRORS
    Collection Date 2010-11-27
     
    Diffraction Radiation
    Monochromator EITHER 111 OR 311 SILICON SINGLE CRISTALS
    Diffraction Protocol MAD
     
    Diffraction Source
    Source SYNCHROTRON
    Type ESRF BEAMLINE BM30A
    Wavelength 0.979
    Site ESRF
    Beamline BM30A
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 3.0
    Resolution(High) 1.2
    Resolution(Low) 45.83
    Number Reflections(Observed) 78373
    Percent Possible(Observed) 98.0
    R Merge I(Observed) 0.05
    B(Isotropic) From Wilson Plot 9.4
    Redundancy 9.9
     
    High Resolution Shell Details
    Resolution(High) 1.2
    Resolution(Low) 1.26
    Percent Possible(All) 95.8
    R Merge I(Observed) 0.46
    Mean I Over Sigma(Observed) 1.7
    Redundancy 10.0
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MAD
    reflnsShellList 1.2
    Resolution(Low) 31.499
    Cut-off Sigma(F) 1.35
    Number of Reflections(Observed) 78332
    Number of Reflections(R-Free) 3920
    Percent Reflections(Observed) 97.14
    R-Factor(Observed) 0.1379
    R-Work 0.1369
    R-Free 0.1553
     
    Temperature Factor Modeling
    Mean Isotropic B Value 11.77
    Anisotropic B[1][1] 0.8311
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 0.8311
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -1.6621
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.1999
    Shell Resolution(Low) 1.2145
    Number of Reflections(R-Free) 134
    Number of Reflections(R-Work) 2537
    R-Factor(R-Work) 0.1708
    R-Factor(R-Free) 0.2108
    Percent Reflections(Observed) 94.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.2145
    Shell Resolution(Low) 1.2299
    Number of Reflections(R-Free) 133
    Number of Reflections(R-Work) 2575
    R-Factor(R-Work) 0.16
    R-Factor(R-Free) 0.1929
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.2299
    Shell Resolution(Low) 1.2461
    Number of Reflections(R-Free) 131
    Number of Reflections(R-Work) 2538
    R-Factor(R-Work) 0.1495
    R-Factor(R-Free) 0.1798
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.2461
    Shell Resolution(Low) 1.2631
    Number of Reflections(R-Free) 135
    Number of Reflections(R-Work) 2585
    R-Factor(R-Work) 0.1411
    R-Factor(R-Free) 0.1352
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.2631
    Shell Resolution(Low) 1.2812
    Number of Reflections(R-Free) 135
    Number of Reflections(R-Work) 2575
    R-Factor(R-Work) 0.1339
    R-Factor(R-Free) 0.1798
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.2812
    Shell Resolution(Low) 1.3003
    Number of Reflections(R-Free) 134
    Number of Reflections(R-Work) 2567
    R-Factor(R-Work) 0.1321
    R-Factor(R-Free) 0.164
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.3003
    Shell Resolution(Low) 1.3206
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 2611
    R-Factor(R-Work) 0.1322
    R-Factor(R-Free) 0.1946
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.3206
    Shell Resolution(Low) 1.3423
    Number of Reflections(R-Free) 137
    Number of Reflections(R-Work) 2582
    R-Factor(R-Work) 0.1263
    R-Factor(R-Free) 0.154
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.3423
    Shell Resolution(Low) 1.3654
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 2590
    R-Factor(R-Work) 0.1156
    R-Factor(R-Free) 0.1495
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.3654
    Shell Resolution(Low) 1.3903
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 2612
    R-Factor(R-Work) 0.1141
    R-Factor(R-Free) 0.1632
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.3903
    Shell Resolution(Low) 1.417
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 2612
    R-Factor(R-Work) 0.1128
    R-Factor(R-Free) 0.1474
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.417
    Shell Resolution(Low) 1.4459
    Number of Reflections(R-Free) 137
    Number of Reflections(R-Work) 2609
    R-Factor(R-Work) 0.1077
    R-Factor(R-Free) 0.1295
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.4459
    Shell Resolution(Low) 1.4774
    Number of Reflections(R-Free) 137
    Number of Reflections(R-Work) 2622
    R-Factor(R-Work) 0.1036
    R-Factor(R-Free) 0.168
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.4774
    Shell Resolution(Low) 1.5117
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 2634
    R-Factor(R-Work) 0.1035
    R-Factor(R-Free) 0.1412
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.5117
    Shell Resolution(Low) 1.5495
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 2639
    R-Factor(R-Work) 0.0941
    R-Factor(R-Free) 0.1331
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.5495
    Shell Resolution(Low) 1.5914
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 2643
    R-Factor(R-Work) 0.0949
    R-Factor(R-Free) 0.1293
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.5914
    Shell Resolution(Low) 1.6383
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 2656
    R-Factor(R-Work) 0.097
    R-Factor(R-Free) 0.1203
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6383
    Shell Resolution(Low) 1.6911
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 2661
    R-Factor(R-Work) 0.0985
    R-Factor(R-Free) 0.1354
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6911
    Shell Resolution(Low) 1.7516
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 2679
    R-Factor(R-Work) 0.106
    R-Factor(R-Free) 0.1333
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.7516
    Shell Resolution(Low) 1.8217
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 2688
    R-Factor(R-Work) 0.1136
    R-Factor(R-Free) 0.1398
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8217
    Shell Resolution(Low) 1.9046
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 2680
    R-Factor(R-Work) 0.1203
    R-Factor(R-Free) 0.142
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9046
    Shell Resolution(Low) 2.005
    Number of Reflections(R-Free) 145
    Number of Reflections(R-Work) 2701
    R-Factor(R-Work) 0.119
    R-Factor(R-Free) 0.1569
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.005
    Shell Resolution(Low) 2.1306
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 2726
    R-Factor(R-Work) 0.1302
    R-Factor(R-Free) 0.1354
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1306
    Shell Resolution(Low) 2.295
    Number of Reflections(R-Free) 145
    Number of Reflections(R-Work) 2729
    R-Factor(R-Work) 0.1316
    R-Factor(R-Free) 0.1641
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.295
    Shell Resolution(Low) 2.5259
    Number of Reflections(R-Free) 147
    Number of Reflections(R-Work) 2763
    R-Factor(R-Work) 0.1469
    R-Factor(R-Free) 0.1559
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5259
    Shell Resolution(Low) 2.8912
    Number of Reflections(R-Free) 147
    Number of Reflections(R-Work) 2784
    R-Factor(R-Work) 0.1602
    R-Factor(R-Free) 0.1766
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8912
    Shell Resolution(Low) 3.6418
    Number of Reflections(R-Free) 149
    Number of Reflections(R-Work) 2841
    R-Factor(R-Work) 0.1568
    R-Factor(R-Free) 0.1646
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.6418
    Shell Resolution(Low) 31.51
    Number of Reflections(R-Free) 154
    Number of Reflections(R-Work) 2973
    R-Factor(R-Work) 0.1821
    R-Factor(R-Free) 0.1609
    Percent Reflections(Observed) 98.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.01
    f_chiral_restr 0.099
    f_dihedral_angle_d 19.032
    f_angle_d 1.612
    f_bond_d 0.014
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1551
    Nucleic Acid Atoms 0
    Heterogen Atoms 61
    Solvent Atoms 411
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) XDS, VERSION JAN 30 2009 2009
    Data Reduction (data scaling) SCALA, VERSION 3.3.16
    Structure Solution SHARP
    Structure Refinement PHENIX (PHENIX.REFINE)
     
    Software
    refinement PHENIX version: (PHENIX.REFINE)
    model building SHARP