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X-RAY DIFFRACTION
Materials and Methods page
4BAP
  •   Crystallization Hide
    Crystallization Experiments
    pH 4.6
    Details 0.1 M SODIUM ACETATE PH 4.6, 0.4-1.5 M SODIUM CHLORIDE, 0.00067 M PROTEIN, 0.012 M LANTHANIDE COMPLEX, 293 K, 3-7 DAYS
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 77.51 α = 90
    b = 77.51 β = 90
    c = 38.48 γ = 90
     
    Space Group
    Space Group Name:    P 43 21 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD (QUANTUM 315R)
    Type ADSC
    Details MIRRORS
    Collection Date 2010-07-01
     
    Diffraction Radiation
    Monochromator EITHER 111 OR 311 SILICON SINGLE CRISTALS
    Diffraction Protocol MAD
     
    Diffraction Source
    Source SYNCHROTRON
    Type ESRF BEAMLINE BM30A
    Wavelength 0.979
    Site ESRF
    Beamline BM30A
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 3.0
    Resolution(High) 1.21
    Resolution(Low) 38.75
    Number Reflections(Observed) 36469
    Percent Possible(Observed) 99.7
    R Merge I(Observed) 0.05
    B(Isotropic) From Wilson Plot 10.84
    Redundancy 7.6
     
    High Resolution Shell Details
    Resolution(High) 1.21
    Resolution(Low) 1.27
    Percent Possible(All) 98.8
    R Merge I(Observed) 0.6
    Mean I Over Sigma(Observed) 1.3
    Redundancy 7.2
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MAD
    reflnsShellList 1.207
    Resolution(Low) 38.755
    Cut-off Sigma(F) 1.35
    Number of Reflections(Observed) 36424
    Number of Reflections(R-Free) 1823
    Percent Reflections(Observed) 99.59
    R-Factor(Observed) 0.1591
    R-Work 0.1581
    R-Free 0.1783
     
    Temperature Factor Modeling
    Mean Isotropic B Value 13.35
    Anisotropic B[1][1] 0.073
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 0.073
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -0.1459
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.2071
    Shell Resolution(Low) 1.2397
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 2576
    R-Factor(R-Work) 0.2342
    R-Factor(R-Free) 0.2749
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.2397
    Shell Resolution(Low) 1.2762
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 2627
    R-Factor(R-Work) 0.2115
    R-Factor(R-Free) 0.1922
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.2762
    Shell Resolution(Low) 1.3174
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 2620
    R-Factor(R-Work) 0.1867
    R-Factor(R-Free) 0.2059
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.3174
    Shell Resolution(Low) 1.3645
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 2625
    R-Factor(R-Work) 0.1784
    R-Factor(R-Free) 0.2069
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.3645
    Shell Resolution(Low) 1.4191
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 2649
    R-Factor(R-Work) 0.1611
    R-Factor(R-Free) 0.2138
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.4191
    Shell Resolution(Low) 1.4837
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 2629
    R-Factor(R-Work) 0.1464
    R-Factor(R-Free) 0.1596
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.4837
    Shell Resolution(Low) 1.562
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 2646
    R-Factor(R-Work) 0.1367
    R-Factor(R-Free) 0.1625
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.562
    Shell Resolution(Low) 1.6598
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 2666
    R-Factor(R-Work) 0.1349
    R-Factor(R-Free) 0.1545
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6598
    Shell Resolution(Low) 1.788
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 2660
    R-Factor(R-Work) 0.1329
    R-Factor(R-Free) 0.1882
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.788
    Shell Resolution(Low) 1.9679
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 2674
    R-Factor(R-Work) 0.1405
    R-Factor(R-Free) 0.1871
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9679
    Shell Resolution(Low) 2.2526
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 2698
    R-Factor(R-Work) 0.1438
    R-Factor(R-Free) 0.1642
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2526
    Shell Resolution(Low) 2.838
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 2724
    R-Factor(R-Work) 0.1551
    R-Factor(R-Free) 0.1816
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.838
    Shell Resolution(Low) 38.7745
    Number of Reflections(R-Free) 150
    Number of Reflections(R-Work) 2807
    R-Factor(R-Work) 0.1707
    R-Factor(R-Free) 0.1692
    Percent Reflections(Observed) 97.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.005
    f_chiral_restr 0.088
    f_dihedral_angle_d 25.572
    f_angle_d 1.252
    f_bond_d 0.008
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1000
    Nucleic Acid Atoms 0
    Heterogen Atoms 87
    Solvent Atoms 146
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) XDS, VERSION JANUARY 30, 2009
    Data Reduction (data scaling) SCALA, VERSION 3.3.16
    Structure Solution SHARP
    Structure Refinement PHENIX (PHENIX.REFINE)
     
    Software
    refinement PHENIX version: (PHENIX.REFINE)
    model building SHARP