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X-RAY DIFFRACTION
Materials and Methods page
4BAD
  •   Crystallization Hide
    Crystallization Experiments
    pH 4.6
    Details 0.1 M SODIUM ACETATE PH 4.6, 0.4-1.5 M SODIUM CHLORIDE, 0.00025 M PROTEIN, 0.0027 M LANTHANIDE COMPLEX, 293 K, 3-7 DAYS
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 77.4 α = 90
    b = 77.4 β = 90
    c = 38.47 γ = 90
     
    Space Group
    Space Group Name:    P 43 21 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD (QUANTUM 315R)
    Type ADSC
    Details KIRKPATRICK-BAEZ BI-MORPH MIRRORS
    Collection Date 2009-05-27
     
    Diffraction Radiation
    Monochromator CHANNEL CUT CRYOGENICALLY COOLED MONOCHROMATOR CRYSTAL
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type SOLEIL BEAMLINE PROXIMA 1
    Wavelength 0.886
    Site SOLEIL
    Beamline PROXIMA 1
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 3.0
    Resolution(High) 1.35
    Resolution(Low) 19.24
    Number Reflections(Observed) 26192
    Percent Possible(Observed) 99.7
    R Merge I(Observed) 0.04
    B(Isotropic) From Wilson Plot 11.16
    Redundancy 7.5
     
    High Resolution Shell Details
    Resolution(High) 1.35
    Resolution(Low) 1.42
    Percent Possible(All) 99.2
    R Merge I(Observed) 0.19
    Mean I Over Sigma(Observed) 3.8
    Redundancy 6.8
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method SAD
    reflnsShellList 1.35
    Resolution(Low) 18.773
    Cut-off Sigma(F) 1.34
    Number of Reflections(Observed) 26140
    Number of Reflections(R-Free) 1329
    Percent Reflections(Observed) 99.59
    R-Factor(Observed) 0.1527
    R-Work 0.1517
    R-Free 0.1719
     
    Temperature Factor Modeling
    Mean Isotropic B Value 13.17
    Anisotropic B[1][1] -0.2538
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -0.2538
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 0.5076
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.3499
    Shell Resolution(Low) 1.4039
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 2685
    R-Factor(R-Work) 0.1892
    R-Factor(R-Free) 0.2039
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.4039
    Shell Resolution(Low) 1.4678
    Number of Reflections(R-Free) 162
    Number of Reflections(R-Work) 2701
    R-Factor(R-Work) 0.1617
    R-Factor(R-Free) 0.1975
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.4678
    Shell Resolution(Low) 1.5452
    Number of Reflections(R-Free) 159
    Number of Reflections(R-Work) 2714
    R-Factor(R-Work) 0.1467
    R-Factor(R-Free) 0.1638
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.5452
    Shell Resolution(Low) 1.6419
    Number of Reflections(R-Free) 148
    Number of Reflections(R-Work) 2713
    R-Factor(R-Work) 0.1387
    R-Factor(R-Free) 0.1872
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6419
    Shell Resolution(Low) 1.7686
    Number of Reflections(R-Free) 132
    Number of Reflections(R-Work) 2755
    R-Factor(R-Work) 0.1409
    R-Factor(R-Free) 0.1667
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.7686
    Shell Resolution(Low) 1.9464
    Number of Reflections(R-Free) 155
    Number of Reflections(R-Work) 2751
    R-Factor(R-Work) 0.1379
    R-Factor(R-Free) 0.181
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9464
    Shell Resolution(Low) 2.2277
    Number of Reflections(R-Free) 152
    Number of Reflections(R-Work) 2766
    R-Factor(R-Work) 0.1412
    R-Factor(R-Free) 0.163
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2277
    Shell Resolution(Low) 2.8051
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 2820
    R-Factor(R-Work) 0.1485
    R-Factor(R-Free) 0.1469
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8051
    Shell Resolution(Low) 18.7748
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 2906
    R-Factor(R-Work) 0.1627
    R-Factor(R-Free) 0.1808
    Percent Reflections(Observed) 98.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.009
    f_chiral_restr 0.114
    f_dihedral_angle_d 29.458
    f_angle_d 1.815
    f_bond_d 0.019
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1000
    Nucleic Acid Atoms 0
    Heterogen Atoms 90
    Solvent Atoms 159
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) XDS, VERSION JANUARY 30, 2009
    Data Reduction (data scaling) SCALA, VERSION 3.3.16
    Structure Solution SHARP
    Structure Refinement PHENIX (PHENIX.REFINE)
     
    Software
    refinement PHENIX version: (PHENIX.REFINE)
    model building SHARP