X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 58.84 α = 71.91
b = 61.9 β = 86.99
c = 63.91 γ = 74.58
Symmetry
Space Group P 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
-- -- -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE -- -- -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.73 14 90.7 0.06 -- -- 5.9 -- 74538 -- 2.0 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.73 1.82 81.1 0.25 -- 3.4 3.4 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.73 60.75 -- -- -- 74538 3933 90.57 -- 0.17261 0.17021 0.21826 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.727 1.772 -- 278 5192 0.322 0.366 -- 85.26
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 31.868
Anisotropic B[1][1] -0.09
Anisotropic B[1][2] 0.58
Anisotropic B[1][3] -0.92
Anisotropic B[2][2] -1.09
Anisotropic B[2][3] 1.05
Anisotropic B[3][3] 0.31
RMS Deviations
Key Refinement Restraint Deviation
r_gen_planes_refined 0.006
r_chiral_restr 0.088
r_dihedral_angle_4_deg 17.083
r_dihedral_angle_3_deg 14.949
r_dihedral_angle_2_deg 32.693
r_dihedral_angle_1_deg 5.537
r_angle_refined_deg 1.243
r_bond_refined_d 0.008
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 6698
Nucleic Acid Atoms 0
Heterogen Atoms 5
Solvent Atoms 875

Software

Computing
Computing Package Purpose
MOLREP Structure Solution
REFMAC 5.6.0117 Structure Refinement
Software
Software Name Purpose
REFMAC version: 5.6.0117 refinement
MOLREP model building