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X-RAY DIFFRACTION
Materials and Methods page
4B9Z
  •   Crystallization Hide
    Crystallization Experiments
    Details 1.8 M AMMONIUM SULFATE, 0.1 M HEPES (PH7.0), 2% PEG400
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 196.88 α = 90
    b = 196.88 β = 90
    c = 102.76 γ = 120
     
    Space Group
    Space Group Name:    P 6 2 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ESRF BEAMLINE ID14-4
    Wavelength 1
    Site ESRF
    Beamline ID14-4
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 2
    Resolution(Low) 51.38
    Number Reflections(Observed) 79078
    Percent Possible(Observed) 100.0
    R Merge I(Observed) 0.11
    B(Isotropic) From Wilson Plot 24.58
    Redundancy 21.5
     
    High Resolution Shell Details
    Resolution(High) 2.0
    Resolution(Low) 2.1
    Percent Possible(All) 100.0
    R Merge I(Observed) 0.46
    Mean I Over Sigma(Observed) 7.4
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.0
    Resolution(Low) 49.734
    Cut-off Sigma(F) 1.91
    Number of Reflections(Observed) 79078
    Number of Reflections(R-Free) 3974
    Percent Reflections(Observed) 99.97
    R-Factor(Observed) 0.162
    R-Work 0.1607
    R-Free 0.1874
     
    Temperature Factor Modeling
    Anisotropic B[1][1] -3.2253
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -3.2253
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 6.4505
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0
    Shell Resolution(Low) 2.0244
    Number of Reflections(R-Free) 117
    Number of Reflections(R-Work) 2651
    R-Factor(R-Work) 0.183
    R-Factor(R-Free) 0.228
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0244
    Shell Resolution(Low) 2.05
    Number of Reflections(R-Free) 152
    Number of Reflections(R-Work) 2628
    R-Factor(R-Work) 0.176
    R-Factor(R-Free) 0.2161
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.05
    Shell Resolution(Low) 2.077
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 2645
    R-Factor(R-Work) 0.1618
    R-Factor(R-Free) 0.2097
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.077
    Shell Resolution(Low) 2.1055
    Number of Reflections(R-Free) 129
    Number of Reflections(R-Work) 2653
    R-Factor(R-Work) 0.1558
    R-Factor(R-Free) 0.1745
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1055
    Shell Resolution(Low) 2.1355
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 2661
    R-Factor(R-Work) 0.1575
    R-Factor(R-Free) 0.1913
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1355
    Shell Resolution(Low) 2.1674
    Number of Reflections(R-Free) 134
    Number of Reflections(R-Work) 2627
    R-Factor(R-Work) 0.1571
    R-Factor(R-Free) 0.2297
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1674
    Shell Resolution(Low) 2.2013
    Number of Reflections(R-Free) 131
    Number of Reflections(R-Work) 2674
    R-Factor(R-Work) 0.1582
    R-Factor(R-Free) 0.1844
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2013
    Shell Resolution(Low) 2.2374
    Number of Reflections(R-Free) 158
    Number of Reflections(R-Work) 2628
    R-Factor(R-Work) 0.1556
    R-Factor(R-Free) 0.1862
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2374
    Shell Resolution(Low) 2.2759
    Number of Reflections(R-Free) 119
    Number of Reflections(R-Work) 2667
    R-Factor(R-Work) 0.1529
    R-Factor(R-Free) 0.2099
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2759
    Shell Resolution(Low) 2.3173
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 2656
    R-Factor(R-Work) 0.1595
    R-Factor(R-Free) 0.1836
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3173
    Shell Resolution(Low) 2.3619
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 2661
    R-Factor(R-Work) 0.1581
    R-Factor(R-Free) 0.219
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3619
    Shell Resolution(Low) 2.4101
    Number of Reflections(R-Free) 150
    Number of Reflections(R-Work) 2628
    R-Factor(R-Work) 0.1597
    R-Factor(R-Free) 0.2267
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4101
    Shell Resolution(Low) 2.4625
    Number of Reflections(R-Free) 155
    Number of Reflections(R-Work) 2652
    R-Factor(R-Work) 0.1584
    R-Factor(R-Free) 0.1763
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4625
    Shell Resolution(Low) 2.5198
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 2663
    R-Factor(R-Work) 0.1598
    R-Factor(R-Free) 0.1896
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5198
    Shell Resolution(Low) 2.5828
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 2667
    R-Factor(R-Work) 0.1617
    R-Factor(R-Free) 0.1973
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5828
    Shell Resolution(Low) 2.6526
    Number of Reflections(R-Free) 137
    Number of Reflections(R-Work) 2669
    R-Factor(R-Work) 0.1639
    R-Factor(R-Free) 0.1808
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6526
    Shell Resolution(Low) 2.7307
    Number of Reflections(R-Free) 149
    Number of Reflections(R-Work) 2661
    R-Factor(R-Work) 0.168
    R-Factor(R-Free) 0.2219
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.7307
    Shell Resolution(Low) 2.8188
    Number of Reflections(R-Free) 151
    Number of Reflections(R-Work) 2658
    R-Factor(R-Work) 0.1778
    R-Factor(R-Free) 0.2088
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8188
    Shell Resolution(Low) 2.9196
    Number of Reflections(R-Free) 169
    Number of Reflections(R-Work) 2651
    R-Factor(R-Work) 0.1815
    R-Factor(R-Free) 0.1983
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.9196
    Shell Resolution(Low) 3.0364
    Number of Reflections(R-Free) 153
    Number of Reflections(R-Work) 2681
    R-Factor(R-Work) 0.1909
    R-Factor(R-Free) 0.2084
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0364
    Shell Resolution(Low) 3.1746
    Number of Reflections(R-Free) 126
    Number of Reflections(R-Work) 2699
    R-Factor(R-Work) 0.1846
    R-Factor(R-Free) 0.2089
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1746
    Shell Resolution(Low) 3.3419
    Number of Reflections(R-Free) 134
    Number of Reflections(R-Work) 2695
    R-Factor(R-Work) 0.1773
    R-Factor(R-Free) 0.2018
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.3419
    Shell Resolution(Low) 3.5513
    Number of Reflections(R-Free) 133
    Number of Reflections(R-Work) 2723
    R-Factor(R-Work) 0.1623
    R-Factor(R-Free) 0.1835
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.5513
    Shell Resolution(Low) 3.8254
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 2716
    R-Factor(R-Work) 0.1444
    R-Factor(R-Free) 0.1452
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.8254
    Shell Resolution(Low) 4.2102
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 2724
    R-Factor(R-Work) 0.1258
    R-Factor(R-Free) 0.1555
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.2102
    Shell Resolution(Low) 4.8189
    Number of Reflections(R-Free) 165
    Number of Reflections(R-Work) 2736
    R-Factor(R-Work) 0.1263
    R-Factor(R-Free) 0.136
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.8189
    Shell Resolution(Low) 6.0696
    Number of Reflections(R-Free) 150
    Number of Reflections(R-Work) 2772
    R-Factor(R-Work) 0.1473
    R-Factor(R-Free) 0.1758
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 6.0696
    Shell Resolution(Low) 49.7497
    Number of Reflections(R-Free) 147
    Number of Reflections(R-Work) 2958
    R-Factor(R-Work) 0.1931
    R-Factor(R-Free) 0.2185
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.005
    f_chiral_restr 0.078
    f_dihedral_angle_d 13.909
    f_angle_d 1.094
    f_bond_d 0.007
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 6203
    Nucleic Acid Atoms 0
    Heterogen Atoms 142
    Solvent Atoms 444
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) MOSFLM
    Data Reduction (data scaling) SCALEPACK
    Structure Solution MOLREP
    Structure Refinement PHENIX (PHENIX.REFINE)
     
    Software
    refinement PHENIX version: (PHENIX.REFINE)
    model building MOLREP