X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Details 1.8 M AMMONIUM SULFATE, 0.1 M HEPES (PH7.0), 2% PEG400

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 197.33 α = 90
b = 197.33 β = 90
c = 103.03 γ = 120
Symmetry
Space Group P 6 2 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON DIAMOND BEAMLINE I02 -- DIAMOND I02

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.9 49.3 100.0 0.1 -- -- 22.0 -- 92667 -- 0.0 22.54
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.9 2.0 100.0 0.52 -- 6.0 -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
SAD 1.9 49.324 -- 0.0 -- 92667 4639 99.99 -- 0.1641 0.1627 0.191 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.9 1.9216 -- 171 2841 0.2077 0.2554 -- 100.0
X Ray Diffraction 1.9216 1.9442 -- 156 2906 0.1906 0.24 -- 100.0
X Ray Diffraction 1.9442 1.9679 -- 145 2884 0.1866 0.2144 -- 100.0
X Ray Diffraction 1.9679 1.9928 -- 150 2902 0.1717 0.2205 -- 100.0
X Ray Diffraction 1.9928 2.019 -- 156 2893 0.172 0.2161 -- 100.0
X Ray Diffraction 2.019 2.0467 -- 159 2889 0.1604 0.1987 -- 100.0
X Ray Diffraction 2.0467 2.0759 -- 156 2894 0.1636 0.1883 -- 100.0
X Ray Diffraction 2.0759 2.1069 -- 145 2909 0.1599 0.2252 -- 100.0
X Ray Diffraction 2.1069 2.1398 -- 139 2904 0.1675 0.2196 -- 100.0
X Ray Diffraction 2.1398 2.1749 -- 128 2924 0.1667 0.2157 -- 100.0
X Ray Diffraction 2.1749 2.2124 -- 143 2919 0.1562 0.2098 -- 100.0
X Ray Diffraction 2.2124 2.2527 -- 168 2892 0.1599 0.192 -- 100.0
X Ray Diffraction 2.2527 2.296 -- 149 2926 0.156 0.2064 -- 100.0
X Ray Diffraction 2.296 2.3429 -- 162 2915 0.1575 0.185 -- 100.0
X Ray Diffraction 2.3429 2.3938 -- 167 2877 0.1625 0.1882 -- 100.0
X Ray Diffraction 2.3938 2.4495 -- 143 2911 0.1548 0.1872 -- 100.0
X Ray Diffraction 2.4495 2.5107 -- 134 2947 0.1693 0.2168 -- 100.0
X Ray Diffraction 2.5107 2.5786 -- 153 2917 0.1722 0.209 -- 100.0
X Ray Diffraction 2.5786 2.6545 -- 159 2908 0.1738 0.2087 -- 100.0
X Ray Diffraction 2.6545 2.7402 -- 157 2935 0.1778 0.2 -- 100.0
X Ray Diffraction 2.7402 2.8381 -- 177 2902 0.1812 0.2226 -- 100.0
X Ray Diffraction 2.8381 2.9517 -- 148 2948 0.1866 0.2215 -- 100.0
X Ray Diffraction 2.9517 3.086 -- 159 2942 0.1896 0.227 -- 100.0
X Ray Diffraction 3.086 3.2487 -- 154 2958 0.1816 0.2034 -- 100.0
X Ray Diffraction 3.2487 3.4522 -- 148 2961 0.1715 0.1926 -- 100.0
X Ray Diffraction 3.4522 3.7186 -- 162 2975 0.1511 0.1896 -- 100.0
X Ray Diffraction 3.7186 4.0927 -- 160 2972 0.1339 0.1562 -- 100.0
X Ray Diffraction 4.0927 4.6845 -- 158 3018 0.1182 0.1314 -- 100.0
X Ray Diffraction 4.6845 5.9005 -- 164 3037 0.1366 0.138 -- 100.0
X Ray Diffraction 5.9005 49.3402 -- 169 3222 0.1884 0.2008 -- 100.0
Temperature Factor Modeling
Temperature Factor Value
Anisotropic B[1][1] -3.1167
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] -3.1167
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 6.2335
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.005
f_chiral_restr 0.078
f_dihedral_angle_d 12.987
f_angle_d 1.064
f_bond_d 0.007
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 6183
Nucleic Acid Atoms 0
Heterogen Atoms 93
Solvent Atoms 647

Software

Computing
Computing Package Purpose
MOSFLM Data Reduction (intensity integration)
SCALEPACK Data Reduction (data scaling)
AUTOSHARP Structure Solution
PHENIX (PHENIX.REFINE) Structure Refinement
Software
Software Name Purpose
PHENIX version: (PHENIX.REFINE) refinement
AUTOSHARP model building