X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Details 1.8 M AMMONIUM SULFATE, 0.1 M HEPES (PH7.0), 2% PEG400

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 197.33 α = 90
b = 197.33 β = 90
c = 103.03 γ = 120
Symmetry
Space Group P 6 2 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC CCD -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON DIAMOND BEAMLINE I02 -- Diamond I02

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.9 49.3 100.0 0.1 -- -- 22.0 -- 92667 -- 0.0 22.54
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.9 2.0 100.0 0.52 -- 6.0 -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
SAD 1.9 49.324 -- 0.0 -- 92667 4639 99.99 -- 0.1641 0.1627 0.191 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.9 1.9216 -- 171 2841 0.2077 0.2554 -- 100.0
X Ray Diffraction 1.9216 1.9442 -- 156 2906 0.1906 0.24 -- 100.0
X Ray Diffraction 1.9442 1.9679 -- 145 2884 0.1866 0.2144 -- 100.0
X Ray Diffraction 1.9679 1.9928 -- 150 2902 0.1717 0.2205 -- 100.0
X Ray Diffraction 1.9928 2.019 -- 156 2893 0.172 0.2161 -- 100.0
X Ray Diffraction 2.019 2.0467 -- 159 2889 0.1604 0.1987 -- 100.0
X Ray Diffraction 2.0467 2.0759 -- 156 2894 0.1636 0.1883 -- 100.0
X Ray Diffraction 2.0759 2.1069 -- 145 2909 0.1599 0.2252 -- 100.0
X Ray Diffraction 2.1069 2.1398 -- 139 2904 0.1675 0.2196 -- 100.0
X Ray Diffraction 2.1398 2.1749 -- 128 2924 0.1667 0.2157 -- 100.0
X Ray Diffraction 2.1749 2.2124 -- 143 2919 0.1562 0.2098 -- 100.0
X Ray Diffraction 2.2124 2.2527 -- 168 2892 0.1599 0.192 -- 100.0
X Ray Diffraction 2.2527 2.296 -- 149 2926 0.156 0.2064 -- 100.0
X Ray Diffraction 2.296 2.3429 -- 162 2915 0.1575 0.185 -- 100.0
X Ray Diffraction 2.3429 2.3938 -- 167 2877 0.1625 0.1882 -- 100.0
X Ray Diffraction 2.3938 2.4495 -- 143 2911 0.1548 0.1872 -- 100.0
X Ray Diffraction 2.4495 2.5107 -- 134 2947 0.1693 0.2168 -- 100.0
X Ray Diffraction 2.5107 2.5786 -- 153 2917 0.1722 0.209 -- 100.0
X Ray Diffraction 2.5786 2.6545 -- 159 2908 0.1738 0.2087 -- 100.0
X Ray Diffraction 2.6545 2.7402 -- 157 2935 0.1778 0.2 -- 100.0
X Ray Diffraction 2.7402 2.8381 -- 177 2902 0.1812 0.2226 -- 100.0
X Ray Diffraction 2.8381 2.9517 -- 148 2948 0.1866 0.2215 -- 100.0
X Ray Diffraction 2.9517 3.086 -- 159 2942 0.1896 0.227 -- 100.0
X Ray Diffraction 3.086 3.2487 -- 154 2958 0.1816 0.2034 -- 100.0
X Ray Diffraction 3.2487 3.4522 -- 148 2961 0.1715 0.1926 -- 100.0
X Ray Diffraction 3.4522 3.7186 -- 162 2975 0.1511 0.1896 -- 100.0
X Ray Diffraction 3.7186 4.0927 -- 160 2972 0.1339 0.1562 -- 100.0
X Ray Diffraction 4.0927 4.6845 -- 158 3018 0.1182 0.1314 -- 100.0
X Ray Diffraction 4.6845 5.9005 -- 164 3037 0.1366 0.138 -- 100.0
X Ray Diffraction 5.9005 49.3402 -- 169 3222 0.1884 0.2008 -- 100.0
Temperature Factor Modeling
Temperature Factor Value
Anisotropic B[1][1] -3.1167
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] -3.1167
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 6.2335
RMS Deviations
Key Refinement Restraint Deviation
f_angle_d 1.064
f_dihedral_angle_d 12.987
f_chiral_restr 0.078
f_bond_d 0.007
f_plane_restr 0.005
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 6183
Nucleic Acid Atoms 0
Heterogen Atoms 93
Solvent Atoms 647

Software

Software
Software Name Purpose
PHENIX refinement version: (PHENIX.REFINE)
MOSFLM data reduction
SCALEPACK data scaling
autoSHARP phasing