X-RAY DIFFRACTION Experimental Data & Validation


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Crystallization

Crystalization Experiments
pH 7.6
Details 28% PEG4000, 5% GLYCEROL, 0.1 M AMMONIUM ACETATE, 0.085 M SODIUM CITRATE PH 5.6, 5 MM ATP, 10 MM MGCL2, 291 K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 202.33 α = 90
b = 77.47 β = 101.71
c = 182.96 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC -- 2011-11-07
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ESRF BEAMLINE ID23-1 -- ESRF ID23-1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.4 59.72 99.6 0.088 -- -- 3.2 -- 108374 -- 0.0 44.05
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.4 2.47 100.0 0.49 -- 1.55 3.2 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.4 59.717 -- 0.46 -- 108315 5501 99.54 -- 0.1986 0.1964 0.2387 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.4 2.4273 -- 177 3408 0.2942 0.3554 -- 100.0
X Ray Diffraction 2.4273 2.4558 -- 188 3404 0.2836 0.3883 -- 100.0
X Ray Diffraction 2.4558 2.4858 -- 172 3454 0.2774 0.3462 -- 100.0
X Ray Diffraction 2.4858 2.5172 -- 174 3433 0.263 0.3326 -- 100.0
X Ray Diffraction 2.5172 2.5504 -- 182 3392 0.2511 0.3259 -- 100.0
X Ray Diffraction 2.5504 2.5853 -- 178 3465 0.2367 0.3226 -- 100.0
X Ray Diffraction 2.5853 2.6222 -- 197 3330 0.2386 0.2709 -- 100.0
X Ray Diffraction 2.6222 2.6614 -- 197 3456 0.2311 0.2959 -- 100.0
X Ray Diffraction 2.6614 2.703 -- 176 3425 0.2272 0.2939 -- 100.0
X Ray Diffraction 2.703 2.7473 -- 196 3367 0.2259 0.3038 -- 100.0
X Ray Diffraction 2.7473 2.7947 -- 177 3443 0.231 0.2967 -- 100.0
X Ray Diffraction 2.7947 2.8455 -- 173 3462 0.2271 0.3237 -- 100.0
X Ray Diffraction 2.8455 2.9002 -- 185 3419 0.2177 0.2676 -- 100.0
X Ray Diffraction 2.9002 2.9594 -- 171 3429 0.2163 0.2755 -- 100.0
X Ray Diffraction 2.9594 3.0237 -- 195 3404 0.2134 0.3044 -- 100.0
X Ray Diffraction 3.0237 3.0941 -- 190 3463 0.2066 0.2574 -- 100.0
X Ray Diffraction 3.0941 3.1715 -- 189 3387 0.219 0.2883 -- 100.0
X Ray Diffraction 3.1715 3.2572 -- 179 3434 0.2144 0.2517 -- 100.0
X Ray Diffraction 3.2572 3.353 -- 183 3452 0.2071 0.2612 -- 100.0
X Ray Diffraction 3.353 3.4612 -- 180 3405 0.2015 0.2558 -- 100.0
X Ray Diffraction 3.4612 3.5849 -- 197 3444 0.1944 0.2511 -- 100.0
X Ray Diffraction 3.5849 3.7285 -- 172 3424 0.1796 0.2009 -- 100.0
X Ray Diffraction 3.7285 3.8981 -- 174 3451 0.1724 0.1984 -- 99.0
X Ray Diffraction 3.8981 4.1036 -- 171 3426 0.1791 0.1991 -- 99.0
X Ray Diffraction 4.1036 4.3606 -- 181 3435 0.1627 0.191 -- 99.0
X Ray Diffraction 4.3606 4.6972 -- 183 3426 0.1581 0.2114 -- 99.0
X Ray Diffraction 4.6972 5.1696 -- 178 3450 0.1635 0.2287 -- 99.0
X Ray Diffraction 5.1696 5.9171 -- 206 3430 0.1751 0.1902 -- 99.0
X Ray Diffraction 5.9171 7.4527 -- 180 3457 0.1984 0.2094 -- 99.0
X Ray Diffraction 7.4527 59.7352 -- 200 3439 0.1832 0.1861 -- 96.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 70.6
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.005
f_chiral_restr 0.066
f_dihedral_angle_d 14.479
f_angle_d 1.099
f_bond_d 0.009
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 18118
Nucleic Acid Atoms 0
Heterogen Atoms 128
Solvent Atoms 514

Software

Computing
Computing Package Purpose
MOSFLM Data Reduction (intensity integration)
SCALA Data Reduction (data scaling)
PHASER Structure Solution
PHENIX (PHENIX.REFINE: 1.8_1069) Structure Refinement
Software
Software Name Purpose
PHENIX version: (PHENIX.REFINE: 1.8_1069) refinement
PHASER model building