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X-RAY DIFFRACTION
Materials and Methods page
4B8O
  •   Crystallization Hide
    Crystallization Experiments
    pH 6.5
    Details 0.1 M BIS-TRIS PROPANE PH 7.0, 14% PEG 3350, 0.2 M NDSB-221 (SIGMA) AND 0.2 M NAF
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 133.49 α = 90
    b = 73.86 β = 91.77
    c = 62.06 γ = 90
     
    Space Group
    Space Group Name:    C 1 2 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD (QUANTUM 315R)
    Type ADSC
    Collection Date 2011-12-14
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type AUSTRALIAN SYNCHROTRON BEAMLINE MX1
    Wavelength 0.9537
    Site AUSTRALIAN SYNCHROTRON
    Beamline MX1
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 2.0
    Resolution(High) 2.08
    Resolution(Low) 64.62
    Number Reflections(Observed) 35070
    Percent Possible(Observed) 97.1
    R Merge I(Observed) 0.08
    B(Isotropic) From Wilson Plot 26.3
    Redundancy 6.3
     
    High Resolution Shell Details
    Resolution(High) 2.08
    Resolution(Low) 2.19
    Percent Possible(All) 82.8
    R Merge I(Observed) 0.47
    Mean I Over Sigma(Observed) 3.6
    Redundancy 5.6
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.084
    Resolution(Low) 46.145
    Cut-off Sigma(F) 1.36
    Number of Reflections(Observed) 35053
    Number of Reflections(R-Free) 1755
    Percent Reflections(Observed) 96.92
    R-Factor(Observed) 0.1688
    R-Work 0.167
    R-Free 0.2022
     
    Temperature Factor Modeling
    Mean Isotropic B Value 30.9
    Anisotropic B[1][1] -3.9203
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 2.4858
    Anisotropic B[2][2] 12.8934
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -8.9731
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.084
    Shell Resolution(Low) 2.1403
    Number of Reflections(R-Free) 81
    Number of Reflections(R-Work) 1929
    R-Factor(R-Work) 0.1985
    R-Factor(R-Free) 0.2124
    Percent Reflections(Observed) 72.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1403
    Shell Resolution(Low) 2.2033
    Number of Reflections(R-Free) 129
    Number of Reflections(R-Work) 2470
    R-Factor(R-Work) 0.1747
    R-Factor(R-Free) 0.2171
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2033
    Shell Resolution(Low) 2.2744
    Number of Reflections(R-Free) 119
    Number of Reflections(R-Work) 2596
    R-Factor(R-Work) 0.1705
    R-Factor(R-Free) 0.1877
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2744
    Shell Resolution(Low) 2.3557
    Number of Reflections(R-Free) 125
    Number of Reflections(R-Work) 2621
    R-Factor(R-Work) 0.1763
    R-Factor(R-Free) 0.2415
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3557
    Shell Resolution(Low) 2.45
    Number of Reflections(R-Free) 149
    Number of Reflections(R-Work) 2606
    R-Factor(R-Work) 0.1744
    R-Factor(R-Free) 0.2068
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.45
    Shell Resolution(Low) 2.5615
    Number of Reflections(R-Free) 135
    Number of Reflections(R-Work) 2600
    R-Factor(R-Work) 0.1714
    R-Factor(R-Free) 0.2162
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5615
    Shell Resolution(Low) 2.6966
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 2640
    R-Factor(R-Work) 0.1751
    R-Factor(R-Free) 0.2302
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6966
    Shell Resolution(Low) 2.8655
    Number of Reflections(R-Free) 154
    Number of Reflections(R-Work) 2579
    R-Factor(R-Work) 0.1723
    R-Factor(R-Free) 0.1987
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8655
    Shell Resolution(Low) 3.0867
    Number of Reflections(R-Free) 155
    Number of Reflections(R-Work) 2622
    R-Factor(R-Work) 0.1704
    R-Factor(R-Free) 0.1965
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0867
    Shell Resolution(Low) 3.3972
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 2616
    R-Factor(R-Work) 0.171
    R-Factor(R-Free) 0.217
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.3972
    Shell Resolution(Low) 3.8886
    Number of Reflections(R-Free) 149
    Number of Reflections(R-Work) 2658
    R-Factor(R-Work) 0.1564
    R-Factor(R-Free) 0.1752
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.8886
    Shell Resolution(Low) 4.8983
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 2644
    R-Factor(R-Work) 0.1405
    R-Factor(R-Free) 0.1893
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.8983
    Shell Resolution(Low) 46.1565
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 2717
    R-Factor(R-Work) 0.1821
    R-Factor(R-Free) 0.2089
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.005
    f_chiral_restr 0.065
    f_dihedral_angle_d 13.918
    f_angle_d 0.961
    f_bond_d 0.007
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 3358
    Nucleic Acid Atoms 0
    Heterogen Atoms 0
    Solvent Atoms 201
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) SCALA
    Structure Solution MOLREP
    Structure Refinement PHENIX (PHENIX.REFINE)
     
    Software
    refinement PHENIX version: (PHENIX.REFINE)
    model building MOLREP