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X-RAY DIFFRACTION
Materials and Methods page
4B7J
  •   Crystallization Hide
    Crystallization Experiments
    Details 15% PEG3350, 0.1M BIS-TRIS PROPANE, 0.1M SODIUM ACETATE BUFFER (PH 4.6)
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 118.55 α = 90
    b = 118.55 β = 90
    c = 67.78 γ = 90
     
    Space Group
    Space Group Name:    P 4 21 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 77
     
    Diffraction Detector
    Detector PILATUS
    Type DECTRIS
    Collection Date 2011-12-18
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type DIAMOND BEAMLINE I03
    Wavelength 0.9763
    Site DIAMOND
    Beamline I03
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 2.0
    Resolution(High) 2.42
    Resolution(Low) 83.83
    Number Reflections(Observed) 19102
    Percent Possible(Observed) 100.0
    R Merge I(Observed) 0.13
    B(Isotropic) From Wilson Plot 33.8
    Redundancy 10.8
     
    High Resolution Shell Details
    Resolution(High) 2.42
    Resolution(Low) 2.55
    Percent Possible(All) 100.0
    R Merge I(Observed) 0.42
    Mean I Over Sigma(Observed) 4.5
    Redundancy 10.5
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.417
    Resolution(Low) 83.828
    Cut-off Sigma(F) 1.37
    Number of Reflections(Observed) 18127
    Number of Reflections(R-Free) 931
    Percent Reflections(Observed) 95.16
    R-Factor(Observed) 0.1914
    R-Work 0.1892
    R-Free 0.2334
     
    Temperature Factor Modeling
    Anisotropic B[1][1] -0.2907
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -0.2907
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 0.5814
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4173
    Shell Resolution(Low) 2.5447
    Number of Reflections(R-Free) 97
    Number of Reflections(R-Work) 1628
    R-Factor(R-Work) 0.2395
    R-Factor(R-Free) 0.2779
    Percent Reflections(Observed) 65.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5447
    Shell Resolution(Low) 2.7041
    Number of Reflections(R-Free) 154
    Number of Reflections(R-Work) 2531
    R-Factor(R-Work) 0.2461
    R-Factor(R-Free) 0.2897
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.7041
    Shell Resolution(Low) 2.9129
    Number of Reflections(R-Free) 146
    Number of Reflections(R-Work) 2522
    R-Factor(R-Work) 0.2158
    R-Factor(R-Free) 0.2812
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.9129
    Shell Resolution(Low) 3.2061
    Number of Reflections(R-Free) 157
    Number of Reflections(R-Work) 2529
    R-Factor(R-Work) 0.1894
    R-Factor(R-Free) 0.2263
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.2061
    Shell Resolution(Low) 3.67
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 2575
    R-Factor(R-Work) 0.1628
    R-Factor(R-Free) 0.2019
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.67
    Shell Resolution(Low) 4.6238
    Number of Reflections(R-Free) 113
    Number of Reflections(R-Work) 2632
    R-Factor(R-Work) 0.1497
    R-Factor(R-Free) 0.1891
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.6238
    Shell Resolution(Low) 83.8779
    Number of Reflections(R-Free) 128
    Number of Reflections(R-Work) 2779
    R-Factor(R-Work) 0.1942
    R-Factor(R-Free) 0.2251
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.003
    f_chiral_restr 0.056
    f_dihedral_angle_d 12.255
    f_angle_d 0.834
    f_bond_d 0.003
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2998
    Nucleic Acid Atoms 0
    Heterogen Atoms 63
    Solvent Atoms 231
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) MOSFLM
    Data Reduction (data scaling) SCALA
    Structure Solution PHASER
    Structure Refinement PHENIX (PHENIX.REFINE)
     
    Software
    refinement PHENIX version: (PHENIX.REFINE)
    model building PHASER