POP-OUT | CLOSE

An Information Portal to 105025 Biological Macromolecular Structures

X-RAY DIFFRACTION
Materials and Methods page
4B53
  •   Crystallization Hide
    Crystallization Experiments
    Details SITTING DROP AT 291K. RESERVOIR OF 100 MICROLITRE 22% PEG 3350 AND 150MM CALCIUM ACETATE. DROP SIZE 100 NANOLITRE PROTEIN AND 100 NANOLITRE RESERVOIR. PROTEIN CONCENTRATION OF 1.5MG/ML
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 57.09 α = 90
    b = 57.09 β = 90
    c = 138.44 γ = 90
     
    Space Group
    Space Group Name:    P 43 2 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD (QUANTUM 315)
    Type ADSC
    Collection Date 2010-03-06
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type DIAMOND BEAMLINE I04
    Wavelength 0.976
    Site DIAMOND
    Beamline I04
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 1.8
    Resolution(Low) 27.96
    Number Reflections(Observed) 22102
    Percent Possible(Observed) 99.9
    R Merge I(Observed) 0.08
    B(Isotropic) From Wilson Plot 24.8
    Redundancy 27.1
     
    High Resolution Shell Details
    Resolution(High) 1.8
    Resolution(Low) 1.85
    Percent Possible(All) 99.9
    R Merge I(Observed) 0.76
    Mean I Over Sigma(Observed) 4.7
    Redundancy 26.3
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.8
    Resolution(Low) 27.957
    Cut-off Sigma(F) 1.34
    Number of Reflections(Observed) 21991
    Number of Reflections(R-Free) 1099
    Percent Reflections(Observed) 99.68
    R-Factor(Observed) 0.1851
    R-Work 0.1826
    R-Free 0.2368
     
    Temperature Factor Modeling
    Anisotropic B[1][1] 6.9156
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 6.9156
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -8.1011
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8001
    Shell Resolution(Low) 1.882
    Number of Reflections(R-Free) 134
    Number of Reflections(R-Work) 2540
    R-Factor(R-Work) 0.2461
    R-Factor(R-Free) 0.2896
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.882
    Shell Resolution(Low) 1.9812
    Number of Reflections(R-Free) 135
    Number of Reflections(R-Work) 2551
    R-Factor(R-Work) 0.2103
    R-Factor(R-Free) 0.2686
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9812
    Shell Resolution(Low) 2.1052
    Number of Reflections(R-Free) 133
    Number of Reflections(R-Work) 2562
    R-Factor(R-Work) 0.1874
    R-Factor(R-Free) 0.2634
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1052
    Shell Resolution(Low) 2.2677
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 2571
    R-Factor(R-Work) 0.1912
    R-Factor(R-Free) 0.2528
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2677
    Shell Resolution(Low) 2.4958
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 2582
    R-Factor(R-Work) 0.195
    R-Factor(R-Free) 0.3256
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4958
    Shell Resolution(Low) 2.8566
    Number of Reflections(R-Free) 137
    Number of Reflections(R-Work) 2618
    R-Factor(R-Work) 0.1948
    R-Factor(R-Free) 0.2503
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8566
    Shell Resolution(Low) 3.5979
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 2649
    R-Factor(R-Work) 0.1742
    R-Factor(R-Free) 0.2225
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.5979
    Shell Resolution(Low) 27.9602
    Number of Reflections(R-Free) 149
    Number of Reflections(R-Work) 2819
    R-Factor(R-Work) 0.1667
    R-Factor(R-Free) 0.2018
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.004
    f_chiral_restr 0.074
    f_dihedral_angle_d 15.933
    f_angle_d 1.083
    f_bond_d 0.006
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1640
    Nucleic Acid Atoms 0
    Heterogen Atoms 59
    Solvent Atoms 195
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) SCALA
    Structure Solution MOLREP
    Structure Refinement PHENIX (PHENIX.REFINE)
     
    Software
    refinement PHENIX version: (PHENIX.REFINE)
    model building MOLREP