POP-OUT | CLOSE

An Information Portal to 105339 Biological Macromolecular Structures

X-RAY DIFFRACTION
Materials and Methods page
4B52
  •   Crystallization Hide
    Crystallization Experiments
    Details 0.2M NACL, 0.1 M HEPES PH 7.5, 25% PEG 3350
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 61.12 α = 90
    b = 77.02 β = 103.58
    c = 64.44 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 120
     
    Diffraction Detector
    Detector PIXEL (PILATUS 6M)
    Type DECTRIS
    Collection Date 2011-09-05
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type SLS BEAMLINE X10SA
    Wavelength 1.0
    Site SLS
    Beamline X10SA
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 1.76
    Resolution(Low) 48.6
    Number Reflections(Observed) 57590
    Percent Possible(Observed) 97.5
    R Merge I(Observed) 0.11
    Redundancy 3.3
     
    High Resolution Shell Details
    Resolution(High) 1.76
    Resolution(Low) 1.86
    Percent Possible(All) 97.5
    R Merge I(Observed) 0.67
    Mean I Over Sigma(Observed) 1.6
    Redundancy 3.3
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.76
    Resolution(Low) 48.6
    Number of Reflections(Observed) 53023
    Number of Reflections(R-Free) 2791
    Percent Reflections(Observed) 96.92
    R-Factor(Observed) 0.19768
    R-Work 0.19508
    R-Free 0.24749
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 16.516
    Anisotropic B[1][1] -0.56
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] -0.43
    Anisotropic B[2][2] 0.66
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -0.3
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.76
    Shell Resolution(Low) 1.806
    Number of Reflections(R-Free) 186
    Number of Reflections(R-Work) 3542
    R-Factor(R-Work) 0.31
    R-Factor(R-Free) 0.358
    Percent Reflections(Observed) 89.94
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_gen_planes_refined 0.011
    r_chiral_restr 0.137
    r_dihedral_angle_4_deg 14.907
    r_dihedral_angle_3_deg 14.385
    r_dihedral_angle_2_deg 32.871
    r_dihedral_angle_1_deg 6.472
    r_angle_refined_deg 2.136
    r_bond_refined_d 0.024
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 4580
    Nucleic Acid Atoms 0
    Heterogen Atoms 83
    Solvent Atoms 590
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) SADABS
    Structure Solution PHASER
    Structure Refinement REFMAC 5.6.0119
     
    Software
    refinement REFMAC version: 5.6.0119
    model building PHASER