X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 8
Details CRYSTALLIZATION BY HANGING DROP AT 4C. CONDITIONS IN DROP: PROTEIN AT 35 MG/ML IN 200MM TRIS PH 8.0 AND 30% (V/V) (RS)-MPD. CONDITIONS IN RESERVOIR: 200MM TRIS PH 8.0 AND 60% (V/V) (RS)-MPD.

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 77.67 α = 90
b = 77.67 β = 90
c = 37.7 γ = 90
Symmetry
Space Group P 43 21 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC CCD TOROIDAL FOCUSING MIRROR 2011-04-23
Diffraction Radiation
Monochromator Protocol
SI(111) CHANNEL CUT SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON NSLS BEAMLINE X6A -- NSLS X6A

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.25 30 99.8 0.06 -- -- 14.1 -- 32449 -- 2.0 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.25 1.27 99.6 0.56 -- 5.5 13.2 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.25 27.05 -- -- -- 30732 1643 99.66 -- 0.13176 0.13048 0.15571 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.25 1.282 -- 106 2009 0.181 0.227 -- 98.92
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 15.093
Anisotropic B[1][1] -0.03
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] -0.03
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 0.06
RMS Deviations
Key Refinement Restraint Deviation
r_gen_planes_refined 0.007
r_dihedral_angle_1_deg 5.501
r_sphericity_free 21.099
r_rigid_bond_restr 1.225
r_dihedral_angle_2_deg 33.844
r_chiral_restr 0.09
r_angle_refined_deg 1.272
r_sphericity_bonded 9.931
r_dihedral_angle_3_deg 12.635
r_dihedral_angle_4_deg 14.462
r_bond_refined_d 0.007
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 1000
Nucleic Acid Atoms 0
Heterogen Atoms 18
Solvent Atoms 152

Software

Software
Software Name Purpose
REFMAC refinement version: 5.6.0117
HKL-2000 data reduction
HKL-2000 data scaling
MOLREP phasing