X-RAY DIFFRACTION Experimental Data & Validation


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Crystallization

Crystalization Experiments
pH 6.2
Details 8% PEG-1000, 100 MM NAK PHOSPHATE, PH 6.2

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 40.28 α = 90
b = 87.25 β = 91.5
c = 62.63 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD(QUANTUM 210) ADSC -- 2010-03-15
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ESRF BEAMLINE ID14-4 -- ESRF ID14-4

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.59 43.62 99.2 0.06 -- -- 3.7 -- 57763 -- 2.0 25.1
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.59 1.69 96.5 0.61 -- 2.19 3.6 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.589 40.266 -- 1.99 -- 57753 2935 99.2 -- 0.1803 0.1786 0.212 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.5891 1.6151 -- 135 2308 0.2602 0.2871 -- 88.0
X Ray Diffraction 1.6151 1.643 -- 124 2634 0.2423 0.2499 -- 100.0
X Ray Diffraction 1.643 1.6729 -- 144 2643 0.231 0.2942 -- 100.0
X Ray Diffraction 1.6729 1.705 -- 143 2586 0.2182 0.2867 -- 100.0
X Ray Diffraction 1.705 1.7398 -- 147 2613 0.2103 0.2201 -- 100.0
X Ray Diffraction 1.7398 1.7777 -- 142 2622 0.1927 0.2701 -- 100.0
X Ray Diffraction 1.7777 1.819 -- 143 2633 0.1927 0.2266 -- 100.0
X Ray Diffraction 1.819 1.8645 -- 135 2596 0.1865 0.2358 -- 100.0
X Ray Diffraction 1.8645 1.9149 -- 158 2650 0.1913 0.2513 -- 100.0
X Ray Diffraction 1.9149 1.9713 -- 122 2596 0.1775 0.2295 -- 100.0
X Ray Diffraction 1.9713 2.0349 -- 148 2663 0.174 0.2307 -- 100.0
X Ray Diffraction 2.0349 2.1076 -- 141 2611 0.1626 0.2073 -- 100.0
X Ray Diffraction 2.1076 2.192 -- 133 2602 0.1629 0.1888 -- 100.0
X Ray Diffraction 2.192 2.2918 -- 135 2665 0.1569 0.2264 -- 100.0
X Ray Diffraction 2.2918 2.4126 -- 124 2628 0.1676 0.202 -- 100.0
X Ray Diffraction 2.4126 2.5637 -- 141 2613 0.1754 0.2302 -- 100.0
X Ray Diffraction 2.5637 2.7616 -- 134 2645 0.1825 0.2365 -- 100.0
X Ray Diffraction 2.7616 3.0394 -- 152 2614 0.1852 0.2244 -- 100.0
X Ray Diffraction 3.0394 3.479 -- 150 2640 0.1633 0.1736 -- 100.0
X Ray Diffraction 3.479 4.3824 -- 137 2623 0.1405 0.1565 -- 99.0
X Ray Diffraction 4.3824 40.2791 -- 147 2633 0.1701 0.1807 -- 98.0
Temperature Factor Modeling
Temperature Factor Value
Anisotropic B[1][1] 1.5699
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] -0.1576
Anisotropic B[2][2] -3.6616
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 2.0917
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.004
f_chiral_restr 0.069
f_dihedral_angle_d 15.763
f_angle_d 0.982
f_bond_d 0.006
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 3339
Nucleic Acid Atoms 0
Heterogen Atoms 50
Solvent Atoms 672

Software

Computing
Computing Package Purpose
XDS Data Reduction (intensity integration)
XDS Data Reduction (data scaling)
AMORE Structure Solution
PHENIX (PHENIX.REFINE) Structure Refinement
Software
Software Name Purpose
PHENIX version: (PHENIX.REFINE) refinement
AMORE model building