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X-RAY DIFFRACTION
Materials and Methods page
4B3C
  •   Crystallization Hide
    Crystallization Experiments
    pH 6.2
    Details 8% PEG1000, 100MM NA/K PHOSPHATE PH 6.2
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 70.56 α = 90
    b = 74.54 β = 90
    c = 41.17 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector IMAGING PLATE
    Type RAXIS
    Details OSMIC CONFOCALS
    Collection Date 2007-09-19
     
    Diffraction Radiation
    Monochromator NI FILTER
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source ROTATING ANODE
    Type RIGAKU RUH3R
    Wavelength 1.5418
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 2.0
    Resolution(High) 1.89
    Resolution(Low) 35.13
    Number Reflections(Observed) 17821
    Percent Possible(Observed) 98.8
    R Merge I(Observed) 0.12
    B(Isotropic) From Wilson Plot 26.8
    Redundancy 6.6
     
    High Resolution Shell Details
    Resolution(High) 1.89
    Resolution(Low) 2.0
    Percent Possible(All) 93.0
    R Merge I(Observed) 0.74
    Mean I Over Sigma(Observed) 2.55
    Redundancy 6.4
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.9
    Resolution(Low) 35.56
    Cut-off Sigma(F) 2.16
    Number of Reflections(Observed) 17690
    Number of Reflections(R-Free) 911
    Percent Reflections(Observed) 99.83
    R-Factor(Observed) 0.2103
    R-Work 0.2076
    R-Free 0.2612
     
    Temperature Factor Modeling
    Anisotropic B[1][1] 1.2127
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -0.7267
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -0.4861
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9001
    Shell Resolution(Low) 2.0002
    Number of Reflections(R-Free) 129
    Number of Reflections(R-Work) 2318
    R-Factor(R-Work) 0.4065
    R-Factor(R-Free) 0.4793
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0002
    Shell Resolution(Low) 2.1255
    Number of Reflections(R-Free) 133
    Number of Reflections(R-Work) 2361
    R-Factor(R-Work) 0.2416
    R-Factor(R-Free) 0.3293
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1255
    Shell Resolution(Low) 2.2896
    Number of Reflections(R-Free) 128
    Number of Reflections(R-Work) 2366
    R-Factor(R-Work) 0.1863
    R-Factor(R-Free) 0.2598
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2896
    Shell Resolution(Low) 2.52
    Number of Reflections(R-Free) 135
    Number of Reflections(R-Work) 2367
    R-Factor(R-Work) 0.1917
    R-Factor(R-Free) 0.2801
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.52
    Shell Resolution(Low) 2.8845
    Number of Reflections(R-Free) 120
    Number of Reflections(R-Work) 2393
    R-Factor(R-Work) 0.2046
    R-Factor(R-Free) 0.2577
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8845
    Shell Resolution(Low) 3.6336
    Number of Reflections(R-Free) 122
    Number of Reflections(R-Work) 2420
    R-Factor(R-Work) 0.1904
    R-Factor(R-Free) 0.2605
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.6336
    Shell Resolution(Low) 35.5658
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 2554
    R-Factor(R-Work) 0.1906
    R-Factor(R-Free) 0.1985
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.003
    f_chiral_restr 0.086
    f_dihedral_angle_d 16.253
    f_angle_d 1.186
    f_bond_d 0.01
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1739
    Nucleic Acid Atoms 0
    Heterogen Atoms 15
    Solvent Atoms 153
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) XDS
    Structure Solution AMORE
    Structure Refinement PHENIX (PHENIX.REFINE)
     
    Software
    refinement PHENIX version: (PHENIX.REFINE)
    model building AMORE