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X-RAY DIFFRACTION
Materials and Methods page
4B35
  •   Crystallization Hide
    Crystallization Experiments
    pH 6.2
    Details 8% PEG-1000, 100 MM NAK PHOSPHATE, PH 6.2
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 37.64 α = 90
    b = 78.71 β = 117.91
    c = 39.59 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC
    Collection Date 2008-10-04
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ESRF BEAMLINE ID14-4
    Wavelength 0.979500
    Site ESRF
    Beamline ID14-4
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 2.0
    Resolution(High) 1.4
    Resolution(Low) 31.97
    Number Reflections(Observed) 35882
    Percent Possible(Observed) 89.3
    R Merge I(Observed) 0.04
    B(Isotropic) From Wilson Plot 22.1
    Redundancy 2.8
     
    High Resolution Shell Details
    Resolution(High) 1.4
    Resolution(Low) 1.48
    Percent Possible(All) 91.7
    R Merge I(Observed) 0.46
    Mean I Over Sigma(Observed) 2.27
    Redundancy 2.6
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.4
    Resolution(Low) 31.969
    Cut-off Sigma(F) 2.0
    Number of Reflections(Observed) 35876
    Number of Reflections(R-Free) 1863
    Percent Reflections(Observed) 89.56
    R-Factor(Observed) 0.1913
    R-Work 0.1896
    R-Free 0.2231
     
    Temperature Factor Modeling
    Anisotropic B[1][1] 1.6405
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 1.9553
    Anisotropic B[2][2] 0.0176
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -1.6581
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.4001
    Shell Resolution(Low) 1.438
    Number of Reflections(R-Free) 137
    Number of Reflections(R-Work) 2648
    R-Factor(R-Work) 0.2737
    R-Factor(R-Free) 0.2968
    Percent Reflections(Observed) 91.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.438
    Shell Resolution(Low) 1.4803
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 2700
    R-Factor(R-Work) 0.2569
    R-Factor(R-Free) 0.2974
    Percent Reflections(Observed) 92.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.4803
    Shell Resolution(Low) 1.5281
    Number of Reflections(R-Free) 155
    Number of Reflections(R-Work) 2681
    R-Factor(R-Work) 0.2389
    R-Factor(R-Free) 0.2536
    Percent Reflections(Observed) 92.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.5281
    Shell Resolution(Low) 1.5827
    Number of Reflections(R-Free) 164
    Number of Reflections(R-Work) 2672
    R-Factor(R-Work) 0.2309
    R-Factor(R-Free) 0.2814
    Percent Reflections(Observed) 92.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.5827
    Shell Resolution(Low) 1.646
    Number of Reflections(R-Free) 151
    Number of Reflections(R-Work) 2671
    R-Factor(R-Work) 0.2241
    R-Factor(R-Free) 0.2546
    Percent Reflections(Observed) 92.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.646
    Shell Resolution(Low) 1.721
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 2679
    R-Factor(R-Work) 0.2141
    R-Factor(R-Free) 0.2299
    Percent Reflections(Observed) 92.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.721
    Shell Resolution(Low) 1.8117
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 2675
    R-Factor(R-Work) 0.2007
    R-Factor(R-Free) 0.2718
    Percent Reflections(Observed) 91.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8117
    Shell Resolution(Low) 1.9252
    Number of Reflections(R-Free) 150
    Number of Reflections(R-Work) 2614
    R-Factor(R-Work) 0.19
    R-Factor(R-Free) 0.2412
    Percent Reflections(Observed) 91.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9252
    Shell Resolution(Low) 2.0738
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 2625
    R-Factor(R-Work) 0.1834
    R-Factor(R-Free) 0.1986
    Percent Reflections(Observed) 89.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0738
    Shell Resolution(Low) 2.2824
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 2588
    R-Factor(R-Work) 0.1813
    R-Factor(R-Free) 0.2272
    Percent Reflections(Observed) 89.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2824
    Shell Resolution(Low) 2.6126
    Number of Reflections(R-Free) 137
    Number of Reflections(R-Work) 2540
    R-Factor(R-Work) 0.1816
    R-Factor(R-Free) 0.2223
    Percent Reflections(Observed) 87.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6126
    Shell Resolution(Low) 3.291
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 2539
    R-Factor(R-Work) 0.1753
    R-Factor(R-Free) 0.1903
    Percent Reflections(Observed) 86.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.291
    Shell Resolution(Low) 31.9769
    Number of Reflections(R-Free) 126
    Number of Reflections(R-Work) 2381
    R-Factor(R-Work) 0.1649
    R-Factor(R-Free) 0.194
    Percent Reflections(Observed) 80.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.004
    f_chiral_restr 0.149
    f_dihedral_angle_d 17.313
    f_angle_d 1.508
    f_bond_d 0.006
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1714
    Nucleic Acid Atoms 0
    Heterogen Atoms 18
    Solvent Atoms 298
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) XDS
    Structure Solution AMORE
    Structure Refinement PHENIX (PHENIX.REFINE)
     
    Software
    refinement PHENIX version: (PHENIX.REFINE)
    model building AMORE