POP-OUT | CLOSE

An Information Portal to 107049 Biological Macromolecular Structures

X-RAY DIFFRACTION
Materials and Methods page
4B08
  •   Crystallization Hide
    Crystallization Experiments
    pH 9.4
    Details 0.1 M BICINE PH 8.0-9.4, 6-10% PEG 8000
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 73.97 α = 90
    b = 127.45 β = 90
    c = 144.08 γ = 90
     
    Space Group
    Space Group Name:    P 2 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD (QUANTUM 315R)
    Type ADSC
    Collection Date 2009-02-12
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ESRF BEAMLINE ID23-1
    Wavelength 0.97930
    Site ESRF
    Beamline ID23-1
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 2.67
    Resolution(Low) 73.97
    Number Reflections(Observed) 39626
    Percent Possible(Observed) 100.0
    R Merge I(Observed) 0.13
    B(Isotropic) From Wilson Plot 45.86
    Redundancy 19.7
     
    High Resolution Shell Details
    Resolution(High) 2.67
    Resolution(Low) 2.81
    Percent Possible(All) 99.8
    R Merge I(Observed) 0.66
    Mean I Over Sigma(Observed) 4.6
    Redundancy 17.2
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method SAD
    reflnsShellList 2.67
    Resolution(Low) 65.8
    Cut-off Sigma(F) 1.35
    Number of Reflections(Observed) 39564
    Number of Reflections(R-Free) 1986
    Percent Reflections(Observed) 99.86
    R-Factor(Observed) 0.1972
    R-Work 0.1952
    R-Free 0.234
     
    Temperature Factor Modeling
    Mean Isotropic B Value 56.5
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6663
    Shell Resolution(Low) 2.7329
    Number of Reflections(R-Free) 155
    Number of Reflections(R-Work) 2587
    R-Factor(R-Work) 0.2429
    R-Factor(R-Free) 0.2922
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.7329
    Shell Resolution(Low) 2.8068
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 2622
    R-Factor(R-Work) 0.2203
    R-Factor(R-Free) 0.2942
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8068
    Shell Resolution(Low) 2.8894
    Number of Reflections(R-Free) 149
    Number of Reflections(R-Work) 2657
    R-Factor(R-Work) 0.2208
    R-Factor(R-Free) 0.306
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8894
    Shell Resolution(Low) 2.9827
    Number of Reflections(R-Free) 117
    Number of Reflections(R-Work) 2674
    R-Factor(R-Work) 0.2142
    R-Factor(R-Free) 0.2781
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.9827
    Shell Resolution(Low) 3.0893
    Number of Reflections(R-Free) 132
    Number of Reflections(R-Work) 2662
    R-Factor(R-Work) 0.2158
    R-Factor(R-Free) 0.274
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0893
    Shell Resolution(Low) 3.213
    Number of Reflections(R-Free) 156
    Number of Reflections(R-Work) 2655
    R-Factor(R-Work) 0.2176
    R-Factor(R-Free) 0.2915
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.213
    Shell Resolution(Low) 3.3592
    Number of Reflections(R-Free) 124
    Number of Reflections(R-Work) 2685
    R-Factor(R-Work) 0.2204
    R-Factor(R-Free) 0.2964
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.3592
    Shell Resolution(Low) 3.5363
    Number of Reflections(R-Free) 118
    Number of Reflections(R-Work) 2686
    R-Factor(R-Work) 0.2036
    R-Factor(R-Free) 0.2644
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.5363
    Shell Resolution(Low) 3.7578
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 2664
    R-Factor(R-Work) 0.1926
    R-Factor(R-Free) 0.2637
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.7578
    Shell Resolution(Low) 4.0479
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 2687
    R-Factor(R-Work) 0.1852
    R-Factor(R-Free) 0.1868
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.0479
    Shell Resolution(Low) 4.4552
    Number of Reflections(R-Free) 158
    Number of Reflections(R-Work) 2674
    R-Factor(R-Work) 0.1622
    R-Factor(R-Free) 0.1961
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.4552
    Shell Resolution(Low) 5.0997
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 2716
    R-Factor(R-Work) 0.1529
    R-Factor(R-Free) 0.1831
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.0997
    Shell Resolution(Low) 6.4242
    Number of Reflections(R-Free) 137
    Number of Reflections(R-Work) 2772
    R-Factor(R-Work) 0.2009
    R-Factor(R-Free) 0.2251
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 6.4242
    Shell Resolution(Low) 65.8234
    Number of Reflections(R-Free) 179
    Number of Reflections(R-Work) 2837
    R-Factor(R-Work) 0.2056
    R-Factor(R-Free) 0.2127
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.002
    f_chiral_restr 0.036
    f_dihedral_angle_d 12.311
    f_angle_d 0.573
    f_bond_d 0.002
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 6615
    Nucleic Acid Atoms 0
    Heterogen Atoms 0
    Solvent Atoms 110
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) MOSFLM
    Data Reduction (data scaling) SCALA
    Structure Solution PHENIX
    Structure Refinement PHENIX (PHENIX.REFINE: DEV_1078)
     
    Software
    refinement PHENIX version: (PHENIX.REFINE: DEV_1078)
    model building PHENIX