X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 5
Details 11% PEG6K, 90 MM NAAC PH 5.0, 18 MM TRIS PH 8.5, 135 MM NACL

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 47.53 α = 90
b = 76.53 β = 90
c = 104.16 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD MARMOSAIC 225 mm CCD -- 2009-03-02
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE RIGAKU FR-E -- -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.8 26.3 97.9 0.05 -- -- 3.4 -- 35173 -- 0.0 24.01
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.8 1.85 94.1 0.49 -- 2.3 3.3 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.8 26.33 -- 0.0 -- 35128 1761 97.6 -- 0.1796 0.1777 0.2152 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.8 1.85 -- 128 2584 0.3401 0.3543 -- 97.63
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 26.92
Anisotropic B[1][1] -6.9132
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 1.6459
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 5.2673
RMS Deviations
Key Refinement Restraint Deviation
t_omega_torsion 3.97
t_bond_d 0.01
t_angle_deg 1.13
t_other_torsion 15.7
Coordinate Error
Parameter Value
Luzzati ESD (Observed) 0.197
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2921
Nucleic Acid Atoms 0
Heterogen Atoms 53
Solvent Atoms 356

Software

Software
Software Name Purpose
BUSTER refinement version: 2.11.1
MOSFLM data reduction
SCALA data scaling
MOLREP phasing