X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 58.01 α = 90
b = 58.01 β = 90
c = 150.52 γ = 90
Symmetry
Space Group P 41 21 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD (QUANTUM 315R) ADSC -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ESRF BEAMLINE ID23-1 -- ESRF ID23-1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.38 46.94 86.0 0.01 -- -- 10.2 -- 46432 -- 5.5 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
OTHER 1.38 45.94 -- -- -- 43988 2345 85.98 -- 0.15015 0.14811 0.1892 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.379 1.415 -- 48 636 0.189 0.251 -- 17.79
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 13.245
Anisotropic B[1][1] -0.01
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] -0.01
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 0.02
RMS Deviations
Key Refinement Restraint Deviation
r_sphericity_bonded 11.751
r_rigid_bond_restr 7.751
r_gen_planes_other 0.006
r_gen_planes_refined 0.012
r_chiral_restr 0.126
r_dihedral_angle_4_deg 13.236
r_dihedral_angle_3_deg 11.801
r_dihedral_angle_2_deg 36.11
r_dihedral_angle_1_deg 6.855
r_angle_other_deg 1.359
r_angle_refined_deg 1.945
r_bond_other_d 0.002
r_bond_refined_d 0.023
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 1545
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 146

Software

Computing
Computing Package Purpose
REFMAC 5.6.0116 Structure Refinement
Software
Software Name Purpose
REFMAC version: 5.6.0116 refinement