X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 57.98 α = 90
b = 57.98 β = 90
c = 150.38 γ = 90
Symmetry
Space Group P 41 21 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ESRF BEAMLINE ID23-1 -- ESRF ID23-1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.38 45.91 86.0 0.12 -- -- 9.8 -- 46257 -- 12.0 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
OTHER 1.38 45.91 -- -- -- 43835 2333 86.04 -- 0.13604 0.13443 0.16565 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.381 1.416 -- 31 607 0.238 0.34 -- 16.63
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 15.844
Anisotropic B[1][1] -0.02
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] -0.02
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 0.05
RMS Deviations
Key Refinement Restraint Deviation
r_sphericity_bonded 15.145
r_rigid_bond_restr 16.992
r_gen_planes_other 0.002
r_gen_planes_refined 0.012
r_chiral_restr 0.121
r_dihedral_angle_4_deg 18.912
r_dihedral_angle_3_deg 11.326
r_dihedral_angle_2_deg 36.671
r_dihedral_angle_1_deg 6.742
r_angle_other_deg 1.218
r_angle_refined_deg 2.013
r_bond_other_d 0.002
r_bond_refined_d 0.026
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 1545
Nucleic Acid Atoms 0
Heterogen Atoms 10
Solvent Atoms 275

Software

Computing
Computing Package Purpose
REFMAC 5.6.0116 Structure Refinement
Software
Software Name Purpose
REFMAC version: 5.6.0116 refinement