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X-RAY DIFFRACTION
Materials and Methods page
4AWJ
  •   Crystallization Hide
    Crystallization Experiments
    pH 6
    Details 0.1 M NA CACODYLATE PH 6.0, 0.2 M MG ACETATE, 15% PEG3350, 5 MM DTT
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 93.4 α = 90
    b = 93.4 β = 90
    c = 362.04 γ = 90
     
    Space Group
    Space Group Name:    P 41 2 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector PIXEL (PILATUS)
    Type DECTRIS
    Details MIRRORS
    Collection Date 2012-04-28
     
    Diffraction Radiation
    Monochromator DOUBLE CRYSTAL
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type DIAMOND BEAMLINE I24
    Wavelength 0.9686
    Site DIAMOND
    Beamline I24
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 3.0
    Resolution(High) 2.5
    Resolution(Low) 30
    Number Reflections(Observed) 56728
    Percent Possible(Observed) 99.9
    R Merge I(Observed) 0.11
    B(Isotropic) From Wilson Plot 46.53
    Redundancy 12.6
     
    High Resolution Shell Details
    Resolution(High) 2.5
    Resolution(Low) 2.6
    Percent Possible(All) 100.0
    R Merge I(Observed) 0.76
    Mean I Over Sigma(Observed) 3.25
    Redundancy 11.7
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method OTHER
    reflnsShellList 2.5
    Resolution(Low) 29.536
    Cut-off Sigma(F) 2.01
    Number of Reflections(Observed) 56672
    Number of Reflections(R-Free) 2834
    Percent Reflections(Observed) 99.89
    R-Factor(Observed) 0.2224
    R-Work 0.2202
    R-Free 0.2636
     
    Temperature Factor Modeling
    Anisotropic B[1][1] 13.6276
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 13.6276
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 4.2148
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5
    Shell Resolution(Low) 2.5431
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 2640
    R-Factor(R-Work) 0.3218
    R-Factor(R-Free) 0.3718
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5431
    Shell Resolution(Low) 2.5893
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 2645
    R-Factor(R-Work) 0.3096
    R-Factor(R-Free) 0.4216
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5893
    Shell Resolution(Low) 2.6391
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 2628
    R-Factor(R-Work) 0.297
    R-Factor(R-Free) 0.3792
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6391
    Shell Resolution(Low) 2.6929
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 2648
    R-Factor(R-Work) 0.281
    R-Factor(R-Free) 0.3281
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6929
    Shell Resolution(Low) 2.7514
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 2685
    R-Factor(R-Work) 0.2602
    R-Factor(R-Free) 0.3333
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.7514
    Shell Resolution(Low) 2.8154
    Number of Reflections(R-Free) 137
    Number of Reflections(R-Work) 2611
    R-Factor(R-Work) 0.2525
    R-Factor(R-Free) 0.2825
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8154
    Shell Resolution(Low) 2.8857
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 2645
    R-Factor(R-Work) 0.2516
    R-Factor(R-Free) 0.3419
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8857
    Shell Resolution(Low) 2.9637
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 2630
    R-Factor(R-Work) 0.2371
    R-Factor(R-Free) 0.3066
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.9637
    Shell Resolution(Low) 3.0508
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 2674
    R-Factor(R-Work) 0.243
    R-Factor(R-Free) 0.3082
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0508
    Shell Resolution(Low) 3.1492
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 2673
    R-Factor(R-Work) 0.2436
    R-Factor(R-Free) 0.2773
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1492
    Shell Resolution(Low) 3.2616
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 2670
    R-Factor(R-Work) 0.2328
    R-Factor(R-Free) 0.2686
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.2616
    Shell Resolution(Low) 3.392
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 2659
    R-Factor(R-Work) 0.2361
    R-Factor(R-Free) 0.3293
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.392
    Shell Resolution(Low) 3.5461
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 2688
    R-Factor(R-Work) 0.2303
    R-Factor(R-Free) 0.2653
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.5461
    Shell Resolution(Low) 3.7327
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 2706
    R-Factor(R-Work) 0.224
    R-Factor(R-Free) 0.2748
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.7327
    Shell Resolution(Low) 3.9661
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 2679
    R-Factor(R-Work) 0.2084
    R-Factor(R-Free) 0.2263
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.9661
    Shell Resolution(Low) 4.2715
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 2730
    R-Factor(R-Work) 0.1847
    R-Factor(R-Free) 0.2323
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.2715
    Shell Resolution(Low) 4.6998
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 2725
    R-Factor(R-Work) 0.1625
    R-Factor(R-Free) 0.2016
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.6998
    Shell Resolution(Low) 5.3763
    Number of Reflections(R-Free) 145
    Number of Reflections(R-Work) 2748
    R-Factor(R-Work) 0.1848
    R-Factor(R-Free) 0.2219
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.3763
    Shell Resolution(Low) 6.7602
    Number of Reflections(R-Free) 148
    Number of Reflections(R-Work) 2807
    R-Factor(R-Work) 0.2376
    R-Factor(R-Free) 0.2646
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 6.7602
    Shell Resolution(Low) 29.5377
    Number of Reflections(R-Free) 155
    Number of Reflections(R-Work) 2947
    R-Factor(R-Work) 0.2054
    R-Factor(R-Free) 0.2205
    Percent Reflections(Observed) 99.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.003
    f_chiral_restr 0.044
    f_dihedral_angle_d 12.604
    f_angle_d 0.634
    f_bond_d 0.002
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 10389
    Nucleic Acid Atoms 0
    Heterogen Atoms 86
    Solvent Atoms 289
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) XSCALE
    Structure Solution PHENIX
    Structure Refinement PHENIX (PHENIX.REFINE: 1.7.3_928)
     
    Software
    refinement PHENIX version: (PHENIX.REFINE: 1.7.3_928)
    model building PHENIX