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X-RAY DIFFRACTION
Materials and Methods page
4AVR
  •   Crystallization Hide
    Crystallization Experiments
    pH 5.5
    Details 25% PEG 3350, 0.2M NACL AND 0.1M BIS-TRIS PH 5.5
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 33.98 α = 102.8
    b = 39.02 β = 103.48
    c = 41.87 γ = 115.54
     
    Space Group
    Space Group Name:    P 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD (Q315R)
    Type ADSC
    Details MIRRORS
     
    Diffraction Radiation
    Monochromator SI(311)
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type DIAMOND BEAMLINE I03
    Wavelength 0.9763
    Site DIAMOND
    Beamline I03
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 2.0
    Resolution(High) 1.08
    Resolution(Low) 50
    Number Reflections(Observed) 65937
    Percent Possible(Observed) 92.1
    R Merge I(Observed) 0.06
    Redundancy 4.1
     
    High Resolution Shell Details
    Resolution(High) 1.08
    Resolution(Low) 1.1
    Percent Possible(All) 88.8
    R Merge I(Observed) 0.17
    Mean I Over Sigma(Observed) 9.1
    Redundancy 3.6
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method SAD
    reflnsShellList 1.08
    Resolution(Low) 37.87
    Number of Reflections(Observed) 65937
    Number of Reflections(R-Free) 3501
    Percent Reflections(Observed) 91.98
    R-Factor(Observed) 0.15015
    R-Work 0.14873
    R-Free 0.17747
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 14.625
    Anisotropic B[1][1] 0.1
    Anisotropic B[1][2] -0.27
    Anisotropic B[1][3] 0.26
    Anisotropic B[2][2] -0.09
    Anisotropic B[2][3] -0.22
    Anisotropic B[3][3] -0.21
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.079
    Shell Resolution(Low) 1.107
    Number of Reflections(R-Free) 245
    Number of Reflections(R-Work) 4649
    R-Factor(R-Work) 0.155
    R-Factor(R-Free) 0.186
    Percent Reflections(Observed) 87.24
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_sphericity_bonded 9.609
    r_sphericity_free 22.173
    r_rigid_bond_restr 10.058
    r_gen_planes_other 0.005
    r_gen_planes_refined 0.007
    r_chiral_restr 0.098
    r_dihedral_angle_4_deg 18.127
    r_dihedral_angle_3_deg 11.986
    r_dihedral_angle_2_deg 22.952
    r_dihedral_angle_1_deg 6.36
    r_angle_other_deg 1.357
    r_angle_refined_deg 1.531
    r_bond_other_d 0.003
    r_bond_refined_d 0.009
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1447
    Nucleic Acid Atoms 0
    Heterogen Atoms 0
    Solvent Atoms 204
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) XIA2
    Data Reduction (data scaling) XIA2
    Structure Solution SHELX
    Structure Refinement REFMAC 5.6.0117
     
    Software
    refinement REFMAC version: 5.6.0117
    model building SHELX