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X-RAY DIFFRACTION
Materials and Methods page
4AVF
  •   Crystallization Hide
    Crystallization Experiments
    pH 6.5
    Details 11% PEG 4000, 0.1M MES PH 6.5
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 116.59 α = 90
    b = 116.59 β = 90
    c = 259.17 γ = 90
     
    Space Group
    Space Group Name:    P 41 21 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector PIXEL (PILATUS 6M)
    Type DECTRIS
    Details MIRRORS
    Collection Date 2010-12-14
     
    Diffraction Radiation
    Monochromator SI(311)
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ESRF BEAMLINE ID29
    Wavelength 0.99
    Site ESRF
    Beamline ID29
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 2.0
    Resolution(High) 2.23
    Resolution(Low) 106
    Number Reflections(Observed) 87734
    Percent Possible(Observed) 100.0
    R Merge I(Observed) 0.08
    Redundancy 9.1
     
    High Resolution Shell Details
    Resolution(High) 2.23
    Resolution(Low) 2.29
    Percent Possible(All) 100.0
    R Merge I(Observed) 0.75
    Mean I Over Sigma(Observed) 3.2
    Redundancy 9.4
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.23
    Resolution(Low) 106.33
    Number of Reflections(Observed) 83337
    Number of Reflections(R-Free) 4397
    Percent Reflections(Observed) 99.94
    R-Factor(Observed) 0.18045
    R-Work 0.17942
    R-Free 0.20003
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 52.371
    Anisotropic B[1][1] -0.42
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -0.42
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 0.85
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.23
    Shell Resolution(Low) 2.287
    Number of Reflections(R-Free) 279
    Number of Reflections(R-Work) 5689
    R-Factor(R-Work) 0.241
    R-Factor(R-Free) 0.27
    Percent Reflections(Observed) 99.98
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_gen_planes_other 0.003
    r_gen_planes_refined 0.005
    r_chiral_restr 0.066
    r_dihedral_angle_4_deg 14.574
    r_dihedral_angle_3_deg 12.34
    r_dihedral_angle_2_deg 33.414
    r_dihedral_angle_1_deg 5.617
    r_angle_other_deg 1.081
    r_angle_refined_deg 1.242
    r_bond_other_d 0.004
    r_bond_refined_d 0.009
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 9094
    Nucleic Acid Atoms 0
    Heterogen Atoms 0
    Solvent Atoms 360
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) XIA2
    Data Reduction (data scaling) XIA2
    Structure Solution PHASER
    Structure Refinement REFMAC 5.6.0117
     
    Software
    refinement REFMAC version: 5.6.0117
    model building PHASER