X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 7
Details pH 7

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 114.05 α = 90
b = 111.47 β = 102.07
c = 88.34 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD (MX-225) MARRESEARCH -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SLS BEAMLINE X10SA -- SLS X10SA

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
3.2 38 98.0 0.23 -- -- 3.9 -- 14044 -- 1.7 80.38
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
3.2 3.4 95.4 0.92 -- 1.7 3.8 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 3.2 38.05 -- 1.35 -- 14044 700 78.39 -- 0.2236 0.2212 0.2679 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 3.2002 3.4472 -- 140 2703 0.3283 0.4267 -- 80.0
X Ray Diffraction 3.4472 3.7938 -- 143 2687 0.2543 0.3018 -- 79.0
X Ray Diffraction 3.7938 4.3421 -- 138 2626 0.1929 0.2628 -- 78.0
X Ray Diffraction 4.3421 5.468 -- 140 2663 0.1757 0.2422 -- 78.0
X Ray Diffraction 5.468 38.053 -- 139 2665 0.2289 0.2286 -- 77.0
Temperature Factor Modeling
Temperature Factor Value
Anisotropic B[1][1] 0.6253
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] -4.3982
Anisotropic B[2][2] -0.0794
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -0.546
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.007
f_chiral_restr 0.121
f_dihedral_angle_d 20.644
f_angle_d 1.938
f_bond_d 0.022
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 7205
Nucleic Acid Atoms 0
Heterogen Atoms 124
Solvent Atoms 0

Software

Computing
Computing Package Purpose
XDS Data Reduction (intensity integration)
XSCALE Data Reduction (data scaling)
MOLREP Structure Solution
PHENIX (PHENIX.REFINE) Structure Refinement
Software
Software Name Purpose
PHENIX version: (PHENIX.REFINE) refinement
MOLREP model building