X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 7
Details PH 7

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 88.79 α = 90
b = 93.28 β = 90
c = 225.34 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC -- 2009-10-25
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON DIAMOND BEAMLINE I03 -- DIAMOND I03

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.4 29.9 99.3 0.05 -- -- 6.6 -- 72977 -- 3.0 61.38
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.41 2.54 97.1 0.49 -- 3.1 6.0 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.41 29.95 -- 0.0 -- 72763 3668 99.61 -- 0.2017 0.2009 0.2158 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.41 2.47 -- 275 5028 0.2391 0.2587 -- 99.61
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 66.68
Anisotropic B[1][1] -13.6731
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 2.3637
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 11.3093
RMS Deviations
Key Refinement Restraint Deviation
t_bond_d 0.008
t_angle_deg 0.97
t_omega_torsion 2.54
t_other_torsion 2.93
Coordinate Error
Parameter Value
Luzzati ESD (Observed) 0.395
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 8688
Nucleic Acid Atoms 0
Heterogen Atoms 245
Solvent Atoms 323

Software

Computing
Computing Package Purpose
XDS Data Reduction (intensity integration)
SCALA Data Reduction (data scaling)
PHENIX AUTOMR Structure Solution
BUSTER 2.10.0 Structure Refinement
Software
Software Name Purpose
BUSTER version: 2.10.0 refinement
PHENIX version: AUTOMR model building