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X-RAY DIFFRACTION
Materials and Methods page
4ALZ
  •   Crystallization Hide
    Crystallization Experiments
    Details YSCD150-347 G283P CRYSTALS GREW FROM EQUAL VOLUMES OF PROTEIN (5.8 MG/ML IN 20 MM HEPES PH 7.0, 60 MM NACL) WITH PRECIPITANT SOLUTION (0.15 M NAH2PO4, 20 % (W/V) PEG 3350, 60 MM NACL) IN HANGING-DROP VAPOR-DIFFUSION CRYSTALLIZATION TRAYS AT 292 K (EASYXTAL; QIAGEN).
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 37.99 α = 90
    b = 51.55 β = 106.08
    c = 50.63 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD (MX-225)
    Type MARRESEARCH
    Collection Date 2011-06-16
     
    Diffraction Radiation
    Monochromator KMC-1
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type BESSY BEAMLINE 14.1
    Wavelength 0.91841
    Site BESSY
    Beamline 14.1
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 2.0
    Resolution(High) 1.4
    Resolution(Low) 29.8
    Number Reflections(Observed) 36930
    Percent Possible(Observed) 95.5
    R Merge I(Observed) 0.04
    B(Isotropic) From Wilson Plot 13.94
    Redundancy 3.7
     
    High Resolution Shell Details
    Resolution(High) 1.4
    Resolution(Low) 1.48
    Percent Possible(All) 99.7
    R Merge I(Observed) 0.55
    Mean I Over Sigma(Observed) 2.3
    Redundancy 3.5
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method OTHER
    reflnsShellList 1.4
    Resolution(Low) 29.791
    Cut-off Sigma(F) 1.99
    Number of Reflections(Observed) 36927
    Number of Reflections(R-Free) 1847
    Percent Reflections(Observed) 99.55
    R-Factor(Observed) 0.1912
    R-Work 0.1894
    R-Free 0.2258
     
    Temperature Factor Modeling
    Anisotropic B[1][1] -0.7547
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] -0.4714
    Anisotropic B[2][2] 2.7898
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -2.0351
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.4001
    Shell Resolution(Low) 1.4379
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 2689
    R-Factor(R-Work) 0.2865
    R-Factor(R-Free) 0.359
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.4379
    Shell Resolution(Low) 1.4802
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 2680
    R-Factor(R-Work) 0.2533
    R-Factor(R-Free) 0.3084
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.4802
    Shell Resolution(Low) 1.528
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 2727
    R-Factor(R-Work) 0.22
    R-Factor(R-Free) 0.2416
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.528
    Shell Resolution(Low) 1.5826
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 2684
    R-Factor(R-Work) 0.1938
    R-Factor(R-Free) 0.2331
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.5826
    Shell Resolution(Low) 1.646
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 2701
    R-Factor(R-Work) 0.2012
    R-Factor(R-Free) 0.2445
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.646
    Shell Resolution(Low) 1.7209
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 2688
    R-Factor(R-Work) 0.1944
    R-Factor(R-Free) 0.2354
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.7209
    Shell Resolution(Low) 1.8116
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 2702
    R-Factor(R-Work) 0.1819
    R-Factor(R-Free) 0.2103
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8116
    Shell Resolution(Low) 1.9251
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 2652
    R-Factor(R-Work) 0.2047
    R-Factor(R-Free) 0.2341
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9251
    Shell Resolution(Low) 2.0737
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 2669
    R-Factor(R-Work) 0.196
    R-Factor(R-Free) 0.2211
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0737
    Shell Resolution(Low) 2.2823
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 2682
    R-Factor(R-Work) 0.1943
    R-Factor(R-Free) 0.233
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2823
    Shell Resolution(Low) 2.6124
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 2712
    R-Factor(R-Work) 0.1837
    R-Factor(R-Free) 0.1968
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6124
    Shell Resolution(Low) 3.2907
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 2719
    R-Factor(R-Work) 0.1775
    R-Factor(R-Free) 0.2324
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.2907
    Shell Resolution(Low) 29.7973
    Number of Reflections(R-Free) 147
    Number of Reflections(R-Work) 2775
    R-Factor(R-Work) 0.1712
    R-Factor(R-Free) 0.2086
    Percent Reflections(Observed) 99.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.006
    f_chiral_restr 0.082
    f_dihedral_angle_d 15.041
    f_angle_d 1.238
    f_bond_d 0.009
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1562
    Nucleic Acid Atoms 0
    Heterogen Atoms 11
    Solvent Atoms 289
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) XSCALE
    Structure Solution AUTO-RICKSHAW
    Structure Refinement PHENIX (PHENIX.REFINE)
     
    Software
    refinement PHENIX version: (PHENIX.REFINE)
    model building AUTO-RICKSHAW